RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 OR10Q1Q8NGQ4 319 aa9.32□□□□□ -0.92
SCFD1-220ENST00000556486 ACTRT1Q8TDG2 376 aa9.32□□□□□ -0.92
SCFD1-220ENST00000556486 ANKRD7Q92527 254 aa9.32□□□□□ -0.92
SCFD1-220ENST00000556486 SLCO2A1Q92959 643 aa9.32□□□□□ -0.92
SCFD1-220ENST00000556486 FBXL8Q96CD0 374 aa9.32□□□□□ -0.92
SCFD1-220ENST00000556486 PEX11GQ96HA9 241 aa9.32□□□□□ -0.92
SCFD1-220ENST00000556486 SMIM10Q96HG1 83 aa9.32□□□□□ -0.92
SCFD1-220ENST00000556486 HIST1H2AHQ96KK5 128 aa9.32□□□□□ -0.92
SCFD1-220ENST00000556486 NDNQ99608 321 aa9.32□□□□□ -0.92
SCFD1-220ENST00000556486 HIST1H2AJQ99878 128 aa9.32□□□□□ -0.92
SCFD1-220ENST00000556486 H2AFJQ9BTM1 129 aa9.32□□□□□ -0.92
SCFD1-220ENST00000556486 PHF3Q92576 2039 aaKnown RBP9.32□□□□□ -0.92
SCFD1-220ENST00000556486 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.31□□□□□ -0.92
SCFD1-220ENST00000556486 ZNF860A6NHJ4 632 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 SAGE2PA6NJ88 616 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 PGRMC1O00264 195 aaKnown RBP9.31□□□□□ -0.92
SCFD1-220ENST00000556486 NDC80O14777 642 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 CHST10O43529 356 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 OR1F1O43749 312 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 KLK8O60259 260 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 TPP2P29144 1249 aaPredicted RBP9.31□□□□□ -0.92
SCFD1-220ENST00000556486 CYB561P49447 251 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 HLCSP50747 726 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 ITGA8P53708 1063 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 MLF1P58340 268 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 CCZ1BP86790 482 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 CCZ1P86791 482 aaPredicted RBP9.31□□□□□ -0.92
SCFD1-220ENST00000556486 RGS1Q08116 209 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 PPP1R3AQ16821 1122 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 CMPK2Q5EBM0 449 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 SPANXN3Q5MJ09 141 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 RBM20Q5T481 1227 aaKnown RBP9.31□□□□□ -0.92
SCFD1-220ENST00000556486 SBSNQ6UWP8 590 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 BIVMQ86UB2 503 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 LRRC8AQ8IWT6 810 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 TMEM151AQ8N4L1 468 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 GPATCH11Q8N954 259 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 APCDD1LQ8NCL9 501 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 TRPV3Q8NET8 790 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 OR52N2Q8NGI0 321 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 OR5M3Q8NGP4 307 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 C16orf52Q8NHV5 167 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 UTP15Q8TED0 518 aaKnown RBP9.31□□□□□ -0.92
SCFD1-220ENST00000556486 GRK7Q8WTQ7 553 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 SLC5A11Q8WWX8 675 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 NEIL2Q969S2 332 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 LINGO1Q96FE5 620 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 MS4A14Q96JA4 679 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 TRIM54Q9BYV2 358 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 DEFB127Q9H1M4 99 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 PLAC1Q9HBJ0 212 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 IARS2Q9NSE4 1012 aaKnown RBP9.31□□□□□ -0.92
SCFD1-220ENST00000556486 ARL15Q9NXU5 204 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 L3MBTL1Q9Y468 752 aa9.31□□□□□ -0.92
SCFD1-220ENST00000556486 ZNF407Q9C0G0 2248 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 SYNDIG1LA6NDD5 238 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 URADA6NGE7 173 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 USP27XA6NNY8 438 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 NPIPA2E9PIF3 369 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 NPIPA3F8WFD2 350 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 CES2O00748 559 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 DNAJB6O75190 326 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 SERPINA6P08185 405 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 INHBBP09529 407 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 FOSL1P15407 271 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 TFEBP19484 476 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 GSTM2P28161 218 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 TERF1P54274 439 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 RAC1P63000 192 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 CDKL1Q00532 357 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 REEP5Q00765 189 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 FRG1Q14331 258 aaKnown RBP9.3□□□□□ -0.92
SCFD1-220ENST00000556486 CSHL1Q14406 222 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 CATSPEREQ5SY80 951 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 TEDDM1Q5T9Z0 273 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 TMEM211Q6ICI0 200 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.3□□□□□ -0.92
SCFD1-220ENST00000556486 CDC20BQ86Y33 519 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 ANKRD53Q8N9V6 530 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 ZFP62Q8NB50 900 aaPredicted RBP9.3□□□□□ -0.92
SCFD1-220ENST00000556486 TMEM125Q96AQ2 219 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 PYCR2Q96C36 320 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 CERS2Q96G23 380 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 C18orf12Q96KH6 178 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 ALPK1Q96QP1 1244 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 TP63Q9H3D4 680 aaPredicted RBP9.3□□□□□ -0.92
SCFD1-220ENST00000556486 ACSS3Q9H6R3 686 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 PELI2Q9HAT8 420 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 PNPLA3Q9NST1 481 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 PPP2R2CQ9Y2T4 447 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 KLF13Q9Y2Y9 288 aaPredicted RBP9.3□□□□□ -0.92
SCFD1-220ENST00000556486 MMACHCQ9Y4U1 282 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 CLDN16Q9Y5I7 305 aa9.3□□□□□ -0.92
SCFD1-220ENST00000556486 GOLGA6L10A0A0M3HER8 536 aa9.29□□□□□ -0.92
SCFD1-220ENST00000556486 CTAGE15A4D2H0 777 aa9.29□□□□□ -0.92
SCFD1-220ENST00000556486 FCHO1O14526 889 aa9.29□□□□□ -0.92
SCFD1-220ENST00000556486 DNALI1O14645 258 aaPredicted RBP9.29□□□□□ -0.92
SCFD1-220ENST00000556486 LY6G6DO95868 133 aa9.29□□□□□ -0.92
SCFD1-220ENST00000556486 ZNF888P0CJ79 500 aaPredicted RBP9.29□□□□□ -0.92
SCFD1-220ENST00000556486 RNH1P13489 461 aaKnown RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms