RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 SLC5A11Q8WWX8 675 aa9.88□□□□□ -0.83
SHMT2-215ENST00000554656 SMIM10Q96HG1 83 aa9.88□□□□□ -0.83
SHMT2-215ENST00000554656 LURAP1Q96LR2 239 aa9.88□□□□□ -0.83
SHMT2-215ENST00000554656 PHF12Q96QT6 1004 aa9.88□□□□□ -0.83
SHMT2-215ENST00000554656 SORT1Q99523 831 aa9.88□□□□□ -0.83
SHMT2-215ENST00000554656 TRIM45Q9H8W5 580 aaPredicted RBP9.88□□□□□ -0.83
SHMT2-215ENST00000554656 LRFN1Q9P244 771 aa9.88□□□□□ -0.83
SHMT2-215ENST00000554656 ZFP69BQ9UJL9 534 aa9.88□□□□□ -0.83
SHMT2-215ENST00000554656 ZNF223Q9UK11 482 aaPredicted RBP9.88□□□□□ -0.83
SHMT2-215ENST00000554656 RNF112Q9ULX5 631 aa9.88□□□□□ -0.83
SHMT2-215ENST00000554656 MEMO1Q9Y316 297 aa9.88□□□□□ -0.83
SHMT2-215ENST00000554656 CLDN16Q9Y5I7 305 aa9.88□□□□□ -0.83
SHMT2-215ENST00000554656 DNAJC13O75165 2243 aa9.88□□□□□ -0.83
SHMT2-215ENST00000554656 PHF3Q92576 2039 aaKnown RBP9.87□□□□□ -0.83
SHMT2-215ENST00000554656 TCRBV16S1A1N1A0A5B0 115 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 NPEPPSL1A6NEC2 478 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 CDC7O00311 574 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 ASNA1O43681 348 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 DCTN3O75935 186 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 HSPA4LO95757 839 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 HIST1H2AGP0C0S8 130 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-215ENST00000554656 MTHFD2P13995 350 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 COX6B1P14854 86 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 HIST1H2ADP20671 130 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 AGAP20933 346 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 PTGER1P34995 402 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 AHRP35869 848 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 HNF4AP41235 474 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 NR0B1P51843 470 aaKnown RBP9.87□□□□□ -0.83
SHMT2-215ENST00000554656 NAGLUP54802 743 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 ALDH18A1P54886 795 aaKnown RBP9.87□□□□□ -0.83
SHMT2-215ENST00000554656 TAS2R50P59544 299 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 HERVK_113P63132 956 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 CDKL1Q00532 357 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 RGS1Q08116 209 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 DMTNQ08495 405 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 OR4D1Q15615 310 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 TSNQ15631 228 aaKnown RBP9.87□□□□□ -0.83
SHMT2-215ENST00000554656 C18orf21Q32NC0 220 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-215ENST00000554656 KRTCAP3Q53RY4 240 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 CFAP157Q5JU67 520 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 SLC25A25Q6KCM7 469 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 C3P1Q6ZMU1 363 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 TMPRSS11BQ86T26 416 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 THOC6Q86W42 341 aaKnown RBP9.87□□□□□ -0.83
SHMT2-215ENST00000554656 GPSM1Q86YR5 675 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 ARMC10Q8N2F6 343 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 SPATA6LQ8N4H0 392 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 APCDD1LQ8NCL9 501 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 PDPRQ8NCN5 879 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 CREB3L4Q8TEY5 395 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 AGAP11Q8TF27 550 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 FAR2Q96K12 515 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 HIST1H2AHQ96KK5 128 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 PTCHD1Q96NR3 888 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 DMRTA2Q96SC8 542 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 HIST1H2AJQ99878 128 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 H2AFJQ9BTM1 129 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 ERVK-6Q9BXR3 956 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 PELI2Q9HAT8 420 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 EML4Q9HC35 981 aaKnown RBP9.87□□□□□ -0.83
SHMT2-215ENST00000554656 NPHS2Q9NP85 383 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 CHST11Q9NPF2 352 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 VTI1BQ9UEU0 232 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 STK38LQ9Y2H1 464 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 OARD1Q9Y530 152 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 ASB1Q9Y576 335 aa9.87□□□□□ -0.83
SHMT2-215ENST00000554656 TNPO3Q9Y5L0 923 aaKnown RBP9.87□□□□□ -0.83
SHMT2-215ENST00000554656 INTS1Q8N201 2190 aaKnown RBP9.87□□□□□ -0.83
SHMT2-215ENST00000554656 C2CD3Q4AC94 2353 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 A0A0G2JN53 185 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 A8MUA0 341 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 SUPT3HB4E1H0 165 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 ITM2AO43736 263 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 PRMT3O60678 531 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 SUPT3HO75486 399 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 TBX6O95947 436 aaPredicted RBP9.86□□□□□ -0.83
SHMT2-215ENST00000554656 RPS17P08708 135 aaKnown RBP9.86□□□□□ -0.83
SHMT2-215ENST00000554656 RNH1P13489 461 aaKnown RBP9.86□□□□□ -0.83
SHMT2-215ENST00000554656 GFAPP14136 432 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 JAK1P23458 1154 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 PPP2R1BP30154 601 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 HNRNPH1P31943 449 aaKnown RBP9.86□□□□□ -0.83
SHMT2-215ENST00000554656 TRHRP34981 398 aaPredicted RBP9.86□□□□□ -0.83
SHMT2-215ENST00000554656 RFC3P40938 356 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 KCNC1P48547 511 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 HNRNPFP52597 415 aaKnown RBP9.86□□□□□ -0.83
SHMT2-215ENST00000554656 ARFIP2P53365 341 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 CASP6P55212 293 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 KRTAP10-9P60411 292 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 SETDB1Q15047 1291 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 MAPKAPK3Q16644 382 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 TOR1AIP1Q5JTV8 583 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 ZNF678Q5SXM1 525 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 NXPE4Q6UWF7 544 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 FRMD7Q6ZUT3 714 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 FRA10AC1Q70Z53 315 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 ABHD13Q7L211 337 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 DOLPP1Q86YN1 238 aa9.86□□□□□ -0.83
SHMT2-215ENST00000554656 SCUBE1Q8IWY4 988 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms