RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ACOT13Q9NPJ3 140 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 OR6C2Q9NZP2 312 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 PLAGL1Q9UM63 463 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 YBX2Q9Y2T7 364 aaKnown RBP9.37□□□□□ -0.91
SS18-205ENST00000542420 MAP4K5Q9Y4K4 846 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 NOX1Q9Y5S8 564 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 A0A1W2PP55 124 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 K7EQS6 105 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 SAP18O00422 153 aaKnown RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 FAAHO00519 579 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 TNFRSF10CO14798 259 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 CASC3O15234 703 aaKnown RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 ASNA1O43681 348 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 OR1F1O43749 312 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 RNGTTO60942 597 aaKnown RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 MFN2O95140 757 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 GADD45GO95257 159 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 PIPP12273 146 aaPredicted RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 GABRB1P18505 474 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 HTR1BP28222 390 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 PPP2R1BP30154 601 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 IGFALSP35858 605 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 KRT20P35900 424 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 UGT2B10P36537 528 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 KCNJ5P48544 419 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 RPS3AP61247 264 aaKnown RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 ALDH6A1Q02252 535 aaKnown RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 CD300CQ08708 224 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 PPP1R8Q12972 351 aaKnown RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 SLC9A5Q14940 896 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 CTF1Q16619 201 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 FGD3Q5JSP0 725 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 CD300LDQ6UXZ3 194 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 CHST15Q7LFX5 561 aaPredicted RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 C6orf120Q7Z4R8 191 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 UBE3DQ7Z6J8 389 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 KRT73Q86Y46 540 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 OR2L5Q8NG80 312 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 OR56A1Q8NGH5 318 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 OR10Q1Q8NGQ4 319 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 APH1BQ8WW43 257 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 PROX1Q92786 737 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 SLC22A18Q96BI1 424 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 ZNF354BQ96LW1 612 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 MYADMQ96S97 322 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 DGCR6LQ9BY27 220 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 RNF6Q9Y252 685 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 A3GALT2U3KPV4 340 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 MDC1Q14676 2089 aaKnown RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 OR2A25A4D2G3 310 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 H7BY64 318 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 BCAS1O75363 584 aaPredicted RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 SH3BGRLO75368 114 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 DIRAS1O95057 198 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 APBB3O95704 486 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 ACP5P13686 325 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 S100A1P23297 94 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 CD6P30203 668 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 CDC42P60953 191 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 STXBP1P61764 594 aaKnown RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 TUBA1BP68363 451 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 OLR1P78380 273 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 MRPS21P82921 87 aaKnown RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.36□□□□□ -0.91
SS18-205ENST00000542420 CLCA4Q14CN2 919 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 EXOC3L2Q2M3D2 409 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 C6orf183Q5T699 404 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 ZNF770Q6IQ21 691 aaPredicted RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 ZNF425Q6IV72 752 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 KIAA1211LQ6NV74 962 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 TUBA1AQ71U36 451 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 GALNT10Q86SR1 603 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 P2RY8Q86VZ1 359 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 TRIM69Q86WT6 500 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 CCDC71Q8IV32 467 aaPredicted RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 SLC7A5P1Q8MH63 180 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 DNAJC22Q8N4W6 341 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 SLC5A8Q8N695 610 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 LMNTD1Q8N9Z9 388 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 ANKK1Q8NFD2 765 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 NT5CQ8TCD5 201 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 PHF10Q8WUB8 498 aaKnown RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 SLC38A5Q8WUX1 472 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 SLC35G5Q96KT7 338 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 DACH2Q96NX9 599 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 PRAP1Q96NZ9 151 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 OR2M4Q96R27 311 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 WDR12Q9GZL7 423 aaKnown RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 SLC35C2Q9NQQ7 365 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 FBXL12Q9NXK8 326 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 CALML5Q9NZT1 146 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 ERVK-18Q9QC07 812 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 WARS2Q9UGM6 360 aaKnown RBP9.36□□□□□ -0.91
SS18-205ENST00000542420 MSRAQ9UJ68 235 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 TESMINQ9Y4I5 508 aa9.36□□□□□ -0.91
SS18-205ENST00000542420 DOCK9Q9BZ29 2069 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 BRCA2P51587 3418 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 PRAMEF33A0A0G2JMD5 474 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 A0A1W2PQU0 124 aa9.35□□□□□ -0.91
SS18-205ENST00000542420 EFCAB10A6NFE3 127 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms