RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 OR2M5A3KFT3 312 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 ANKUB1A6NFN9 424 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 ERI2A8K979 691 aaKnown RBP3.49□□□□□ -1.85
CD44-235ENST00000532339 PTGESO14684 152 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 IPO8O15397 1037 aaKnown RBP3.49□□□□□ -1.85
CD44-235ENST00000532339 ZNHIT1O43257 154 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 ZBTB43O43298 467 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 PCDH7O60245 1069 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 OR10H2O60403 315 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 MED24O75448 989 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 GP1BAP07359 652 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 INHBAP08476 426 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 GOLGA8HP0CJ92 632 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 COX6B1P14854 86 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 GABRR2P28476 465 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 ALDH4A1P30038 563 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 OXTRP30559 389 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 PCGF2P35227 344 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 KRT2P35908 639 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 TNFRSF4P43489 277 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 IFNAR2P48551 515 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 ARRB1P49407 418 aaPredicted RBP3.49□□□□□ -1.85
CD44-235ENST00000532339 ACSM1Q08AH1 577 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 NR1D2Q14995 579 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 KRT71Q3SY84 523 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 ZNF876PQ49A33 203 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 TMEM35AQ53FP2 167 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 RNASEH2BQ5TBB1 312 aaKnown RBP3.49□□□□□ -1.85
CD44-235ENST00000532339 SLC27A1Q6PCB7 646 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 FAM198BQ6UWH4 519 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 VASH2Q86V25 355 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 CMTM8Q8IZV2 173 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 C1orf52Q8N6N3 182 aaKnown RBP3.49□□□□□ -1.85
CD44-235ENST00000532339 PAPD5Q8NDF8 572 aaKnown RBP3.49□□□□□ -1.85
CD44-235ENST00000532339 OR2AJ1Q8NGZ0 328 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 EXD1Q8NHP7 514 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 SETD6Q8TBK2 473 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 SLC38A5Q8WUX1 472 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 MR1Q95460 341 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 ZNF524Q96C55 264 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 SCRN2Q96FV2 425 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 MUS81Q96NY9 551 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 LITAFQ99732 161 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 MGME1Q9BQP7 344 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 ABCG4Q9H172 646 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 CPVLQ9H3G5 476 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 DPAGT1Q9H3H5 408 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 SLA2Q9H6Q3 261 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 CHST11Q9NPF2 352 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 DUS2Q9NX74 493 aaKnown RBP3.49□□□□□ -1.85
CD44-235ENST00000532339 KLHL9Q9P2J3 617 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 SLC24A2Q9UI40 661 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 RASAL2Q9UJF2 1139 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 CCL26Q9Y258 94 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 TP53TG5Q9Y2B4 290 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 KLF2Q9Y5W3 355 aaPredicted RBP3.49□□□□□ -1.85
CD44-235ENST00000532339 SLCO1B1Q9Y6L6 691 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.49□□□□□ -1.85
CD44-235ENST00000532339 ABCA4P78363 2273 aa3.49□□□□□ -1.85
CD44-235ENST00000532339 PRRC2CQ9Y520 2896 aaKnown RBP3.49□□□□□ -1.85
CD44-235ENST00000532339 SHANK1Q9Y566 2161 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 A0A1B0GU03 582 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 OR6C76A6NM76 312 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 TMEM178BH3BS89 294 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 CLIC2O15247 247 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 XRCC3O43542 346 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 SLU7O95391 586 aaKnown RBP3.48□□□□□ -1.85
CD44-235ENST00000532339 TBX6O95947 436 aaPredicted RBP3.48□□□□□ -1.85
CD44-235ENST00000532339 IGHV4-39P01824 125 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 APODP05090 189 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 POLR2CP19387 275 aaPredicted RBP3.48□□□□□ -1.85
CD44-235ENST00000532339 OAS2P29728 719 aaKnown RBP3.48□□□□□ -1.85
CD44-235ENST00000532339 CDC25CP30307 473 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 HSPA4P34932 840 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 TNFSF9P41273 254 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 QARSP47897 775 aaKnown RBP3.48□□□□□ -1.85
CD44-235ENST00000532339 ARPP19P56211 112 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 C21orf59P57076 290 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 CD81P60033 236 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 COG7P83436 770 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 RBPJQ06330 500 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 PNRC1Q12796 327 aaPredicted RBP3.48□□□□□ -1.85
CD44-235ENST00000532339 HSPB3Q12988 150 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 ART3Q13508 389 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 TUBB2AQ13885 445 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 MTF1Q14872 753 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 E2F5Q15329 346 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 PDLIM3Q53GG5 364 aaPredicted RBP3.48□□□□□ -1.85
CD44-235ENST00000532339 ARHGAP17Q68EM7 881 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 KRT39Q6A163 491 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 ZNF410Q86VK4 478 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 SNX32Q86XE0 403 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 OR52I2Q8NH67 350 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 APOBEC4Q8WW27 367 aaKnown RBP3.48□□□□□ -1.85
CD44-235ENST00000532339 TMEM158Q8WZ71 300 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 SPDL1Q96EA4 605 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 C14orf79Q96F83 325 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 ST6GAL2Q96JF0 529 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 ZNF354BQ96LW1 612 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 ZNF582Q96NG8 517 aaPredicted RBP3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms