RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ACADLP28330 430 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 ZNF77Q15935 545 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 PRAMEF14Q5SWL7 426 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 PRAMEF13Q5VWM6 474 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 TCTN3Q6NUS6 607 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 WDR53Q7Z5U6 358 aaPredicted RBP18.31■□□□□ 0.52
VPS28-213ENST00000530983 FAM129CQ86XR2 697 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 TMEM19Q96HH6 336 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 ZNF717Q9BY31 904 aaPredicted RBP18.31■□□□□ 0.52
VPS28-213ENST00000530983 UCK2Q9BZX2 261 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 ABCG4Q9H172 646 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 A4GALTQ9NPC4 353 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 NDOR1Q9UHB4 597 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 ABHD14A-ACY1A0A1B0GW23 586 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 SSX4O60224 188 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 MFN2O95140 757 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 ADH1AP07327 375 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 DDCP20711 480 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 ELAVL4P26378 380 aaKnown RBP18.31■□□□□ 0.52
VPS28-213ENST00000530983 SOX3P41225 446 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 COPZ1P61923 177 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 SNRPGP62308 76 aaKnown RBP18.31■□□□□ 0.52
VPS28-213ENST00000530983 RHAGQ02094 409 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 NFE2L1Q14494 772 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 ZNF296Q8WUU4 475 aaPredicted RBP18.31■□□□□ 0.52
VPS28-213ENST00000530983 UBE2E3Q969T4 207 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 TP53INP1Q96A56 240 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 ZDHHC5Q9C0B5 715 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 ZCCHC2Q9C0B9 1178 aaKnown RBP18.31■□□□□ 0.52
VPS28-213ENST00000530983 FBXL12Q9NXK8 326 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 SAGE1Q9NXZ1 904 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 DNAJC27Q9NZQ0 273 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 PCDH10Q9P2E7 1040 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 CLEC2DQ9UHP7 191 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 PLAGL1Q9UM63 463 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 NOTCH4Q99466 2003 aa18.3■□□□□ 0.52
VPS28-213ENST00000530983 C5orf58C9J3I9 102 aa18.3■□□□□ 0.52
VPS28-213ENST00000530983 ALDH9A1P49189 494 aa18.3■□□□□ 0.52
VPS28-213ENST00000530983 ILKQ13418 452 aa18.3■□□□□ 0.52
VPS28-213ENST00000530983 CELF2-AS1Q8N7Q2 184 aa18.3■□□□□ 0.52
VPS28-213ENST00000530983 LILRB4Q8NHJ6 448 aa18.3■□□□□ 0.52
VPS28-213ENST00000530983 ACAT2Q9BWD1 397 aa18.3■□□□□ 0.52
VPS28-213ENST00000530983 C14orf119Q9NWQ9 140 aa18.3■□□□□ 0.52
VPS28-213ENST00000530983 ERVK13-1Q9NX77 482 aa18.3■□□□□ 0.52
VPS28-213ENST00000530983 TBX21Q9UL17 535 aa18.3■□□□□ 0.52
VPS28-213ENST00000530983 A0A075B6Q4 140 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 LOC110117498-PIK3R3F6TDL0 507 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 RTCAO00442 366 aaKnown RBP18.29■□□□□ 0.52
VPS28-213ENST00000530983 PI15O43692 258 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 B4GALT2O60909 372 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 CKMT1AP12532 417 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 DGKGP49619 791 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 DEFA1P59665 94 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 DEFA3P59666 94 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 WDR5P61964 334 aaKnown RBP18.29■□□□□ 0.52
VPS28-213ENST00000530983 KRR1Q13601 381 aaKnown RBP18.29■□□□□ 0.52
VPS28-213ENST00000530983 TMEM201Q5SNT2 666 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 SLX4IPQ5VYV7 408 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 RAET1GQ6H3X3 334 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 FAM83HQ6ZRV2 1179 aaPredicted RBP18.29■□□□□ 0.52
VPS28-213ENST00000530983 UTS2BQ765I0 119 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 SPATC1Q76KD6 591 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 RBM45Q8IUH3 476 aaKnown RBP18.29■□□□□ 0.52
VPS28-213ENST00000530983 CACTIN-AS1Q8N1I8 211 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 SETD7Q8WTS6 366 aaKnown RBP18.29■□□□□ 0.52
VPS28-213ENST00000530983 PIK3R3Q92569 461 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 RAB8BQ92930 207 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 SLC6A18Q96N87 628 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 WFDC6Q9BQY6 131 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 SLC30A2Q9BRI3 323 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 CNPPD1Q9BV87 410 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 BARHL1Q9BZE3 327 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 TBC1D14Q9P2M4 693 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 TMCC3Q9ULS5 477 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 ANKDD1BA6NHY2 528 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 CSO75390 466 aaKnown RBP18.29■□□□□ 0.52
VPS28-213ENST00000530983 POP7O75817 140 aaKnown RBP18.29■□□□□ 0.52
VPS28-213ENST00000530983 PAPLNO95428 1278 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 CSTF2P33240 577 aaKnown RBP eCLIP18.29■□□□□ 0.52
VPS28-213ENST00000530983 RPS19P39019 145 aaKnown RBP18.29■□□□□ 0.52
VPS28-213ENST00000530983 EPHA5P54756 1037 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 CAMK2BQ13554 666 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 OR4D11Q8NGI4 311 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 DHRS1Q96LJ7 313 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 NRTNQ99748 197 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 ASPNQ9BXN1 380 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 TRPV5Q9NQA5 729 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 MARK1Q9P0L2 795 aa18.29■□□□□ 0.52
VPS28-213ENST00000530983 PCYT1BQ9Y5K3 369 aaPredicted RBP18.29■□□□□ 0.52
VPS28-213ENST00000530983 TCF20Q9UGU0 1960 aaKnown RBP18.29■□□□□ 0.52
VPS28-213ENST00000530983 OR10H3O60404 316 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 ENDOUP21128 410 aaKnown RBP18.28■□□□□ 0.52
VPS28-213ENST00000530983 DDX6P26196 483 aaKnown RBP eCLIP18.28■□□□□ 0.52
VPS28-213ENST00000530983 TNFSF8P32971 234 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 GPR1P46091 355 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 MANFP55145 182 aaKnown RBP18.28■□□□□ 0.52
VPS28-213ENST00000530983 C12orf73Q69YU5 71 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 LCTLQ6UWM7 567 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 IL17RDQ8NFM7 739 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 OR5AR1Q8NGP9 310 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms