RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SMURF2Q9HAU4 748 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 A4GALTQ9NPC4 353 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 ZSCAN32Q9NX65 697 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 KCMF1Q9P0J7 381 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 K7ESF4 209 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 M0QX08 132 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 DPM1O60762 260 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 ERAL1O75616 437 aaKnown RBP19.57■□□□□ 0.72
VPS28-209ENST00000528142 ZXDAP98168 799 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 DUSP2Q05923 314 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 SUZ12Q15022 739 aaKnown RBP19.57■□□□□ 0.72
VPS28-209ENST00000528142 ZNF750Q32MQ0 723 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 SHQ1Q6PI26 577 aaKnown RBP19.57■□□□□ 0.72
VPS28-209ENST00000528142 USP51Q70EK9 711 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 TSEN54Q7Z6J9 526 aaKnown RBP19.57■□□□□ 0.72
VPS28-209ENST00000528142 HIPK1Q86Z02 1210 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 ZFP28Q8NHY6 868 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 CYGBQ8WWM9 190 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 ZNF681Q96N22 645 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 BBS4Q96RK4 519 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 SERINC2Q96SA4 455 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 MIR1-1HGQ9H1L0 117 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 SERHL2Q9H4I8 314 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 PNPLA3Q9NST1 481 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 POMT2Q9UKY4 750 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 ANGPT4Q9Y264 503 aa19.57■□□□□ 0.72
VPS28-209ENST00000528142 MDC1Q14676 2089 aaKnown RBP19.56■□□□□ 0.72
VPS28-209ENST00000528142 URADA6NGE7 173 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 H0YAE9 185 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 STK25O00506 426 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 OPN1SWP03999 348 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 THRBP10828 461 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 TYRP1P17643 537 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 BCKDHBP21953 392 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 FASLGP48023 281 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 NXPH1P58417 271 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 ANKRD34AQ69YU3 496 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 KRT80Q6KB66 452 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 TNFAIP8L2Q6P589 184 aaPredicted RBP19.56■□□□□ 0.72
VPS28-209ENST00000528142 TMEM64Q6YI46 380 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 GKN2Q86XP6 184 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 ARL14Q8N4G2 192 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 LMX1AQ8TE12 382 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 FBXL20Q96IG2 436 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 C10orf90Q96M02 699 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 RDH12Q96NR8 316 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 RBM4BQ9BQ04 359 aaKnown RBP19.56■□□□□ 0.72
VPS28-209ENST00000528142 RBM4Q9BWF3 364 aaKnown RBP19.56■□□□□ 0.72
VPS28-209ENST00000528142 SOX17Q9H6I2 414 aaPredicted RBP19.56■□□□□ 0.72
VPS28-209ENST00000528142 PADI2Q9Y2J8 665 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 U3KQV3 271 aa19.56■□□□□ 0.72
VPS28-209ENST00000528142 A0A1W2PS29 197 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 E2F6O75461 281 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 DIRAS1O95057 198 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 TFPTP0C1Z6 253 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 PRKACGP22612 351 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 CXCL12P48061 93 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 ITGA1P56199 1179 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 RUNX2Q13950 521 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 MAPK11Q15759 364 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 DEFB134Q4QY38 66 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 SLC36A4Q6YBV0 504 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 ZCCHC10Q8TBK6 192 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 SLC38A5Q8WUX1 472 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 TRAPPC9Q96Q05 1148 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 MYOCOSA0A1B0GUC4 107 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 HMGN4O00479 90 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 ZSCAN9O15535 394 aaPredicted RBP19.55■□□□□ 0.72
VPS28-209ENST00000528142 NR2F6P10588 404 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 CSNK2A2P19784 350 aaPredicted RBP19.55■□□□□ 0.72
VPS28-209ENST00000528142 GPC1P35052 558 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 SIM2Q14190 667 aaPredicted RBP19.55■□□□□ 0.72
VPS28-209ENST00000528142 MANEAQ5SRI9 462 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 CWF19L1Q69YN2 538 aaKnown RBP19.55■□□□□ 0.72
VPS28-209ENST00000528142 REEP3Q6NUK4 255 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 CEP68Q76N32 757 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 C17orf82Q86X59 251 aaPredicted RBP19.55■□□□□ 0.72
VPS28-209ENST00000528142 CCDC116Q8IYX3 515 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 AVL9Q8NBF6 648 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 RERGQ96A58 199 aaPredicted RBP19.55■□□□□ 0.72
VPS28-209ENST00000528142 SPACA7Q96KW9 195 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 GABARAPL1Q9H0R8 117 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 SEMA6CQ9H3T2 930 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 UCK1Q9HA47 277 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 IFT80Q9P2H3 777 aaPredicted RBP19.55■□□□□ 0.72
VPS28-209ENST00000528142 BAG5Q9UL15 447 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 ENTPD4Q9Y227 616 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 MRPS2Q9Y399 296 aaKnown RBP19.55■□□□□ 0.72
VPS28-209ENST00000528142 SIT1Q9Y3P8 196 aa19.55■□□□□ 0.72
VPS28-209ENST00000528142 DNAJB6O75190 326 aa19.54■□□□□ 0.72
VPS28-209ENST00000528142 H6PDO95479 791 aa19.54■□□□□ 0.72
VPS28-209ENST00000528142 CLIC3O95833 236 aa19.54■□□□□ 0.72
VPS28-209ENST00000528142 IFNA14P01570 189 aa19.54■□□□□ 0.72
VPS28-209ENST00000528142 ALBP02768 609 aa19.54■□□□□ 0.72
VPS28-209ENST00000528142 LINGO3P0C6S8 592 aa19.54■□□□□ 0.72
VPS28-209ENST00000528142 C8orf89P0DMQ9 161 aa19.54■□□□□ 0.72
VPS28-209ENST00000528142 NELFEP18615 380 aaKnown RBP19.54■□□□□ 0.72
VPS28-209ENST00000528142 TNFRSF17Q02223 184 aa19.54■□□□□ 0.72
VPS28-209ENST00000528142 TP53BP2Q13625 1128 aa19.54■□□□□ 0.72
VPS28-209ENST00000528142 ZIK1Q3SY52 487 aaPredicted RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms