RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 SPACA9Q96E40 222 aaPredicted RBP18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 Q96MF0 132 aa18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 COPS7AQ9UBW8 275 aa18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 COL6A5A8TX70 2615 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 CDC7O00311 574 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 GDF1P27539 372 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 MTTPP55157 894 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 EFTUD2Q15029 972 aaKnown RBP eCLIP18.65■□□□□ 0.582e-7■■■■□ 19.6
SQSTM1-215ENST00000514093 PPP1R3AQ16821 1122 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 TTC27Q6P3X3 843 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 SLCO4C1Q6ZQN7 724 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 VN1R5Q7Z5H4 357 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 OR4N5Q8IXE1 308 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 C9orf40Q8IXQ3 194 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 RASGEF1CQ8N431 466 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 SLC22A8Q8TCC7 542 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 SENP5Q96HI0 755 aaPredicted RBP18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 TRIB1Q96RU8 372 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 EGFL8Q99944 293 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 COPS7BQ9H9Q2 264 aaPredicted RBP18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 QPCTLQ9NXS2 382 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 ADAM21Q9UKJ8 722 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 CAMK2AQ9UQM7 478 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 NINQ8N4C6 2090 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 FREM3P0C091 2139 aa18.65■□□□□ 0.58
SQSTM1-215ENST00000514093 SYNDIG1LA6NDD5 238 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 HRKO00198 91 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 TRAPPC6AO75865 159 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 WDR47O94967 919 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 CCDC175P0C221 793 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 CTSSP25774 331 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 SORDQ00796 357 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 SERTAD2Q14140 314 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 CRYMQ14894 314 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 NSUN5P2Q63ZY6 315 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 DGAT2L6Q6ZPD8 337 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 TTLQ8NG68 377 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 ZNF592Q92610 1267 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 ANKRD9Q96BM1 317 aaPredicted RBP18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 PPWD1Q96BP3 646 aaKnown RBP18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 HSPBAP1Q96EW2 488 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 F2RL3Q96RI0 385 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 MAPKAP1Q9BPZ7 522 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 DOHHQ9BU89 302 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 PRDM7Q9NQW5 492 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 VWA7Q9Y334 891 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 SLC6A5Q9Y345 797 aa18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 CHCHD2Q9Y6H1 151 aaPredicted RBP18.64■□□□□ 0.57
SQSTM1-215ENST00000514093 NPEPPSL1A6NEC2 478 aa18.63■□□□□ 0.57
SQSTM1-215ENST00000514093 ANKDD1BA6NHY2 528 aa18.63■□□□□ 0.57
SQSTM1-215ENST00000514093 BANF1O75531 89 aa18.63■□□□□ 0.57
SQSTM1-215ENST00000514093 CLEC3AO75596 197 aa18.63■□□□□ 0.57
SQSTM1-215ENST00000514093 ACSL3O95573 720 aa18.63■□□□□ 0.57
SQSTM1-215ENST00000514093 GNAZP19086 355 aa18.63■□□□□ 0.57
SQSTM1-215ENST00000514093 CXCR5P32302 372 aa18.63■□□□□ 0.57
SQSTM1-215ENST00000514093 RCN2Q14257 317 aa18.63■□□□□ 0.57
SQSTM1-215ENST00000514093 ADPRMQ3LIE5 342 aa18.63■□□□□ 0.57
SQSTM1-215ENST00000514093 NUBPLQ8TB37 319 aa18.63■□□□□ 0.57
SQSTM1-215ENST00000514093 CNIH4Q9P003 139 aa18.63■□□□□ 0.57
SQSTM1-215ENST00000514093 JKAMPQ9P055 326 aa18.63■□□□□ 0.57
SQSTM1-215ENST00000514093 CNOT11Q9UKZ1 510 aaKnown RBP18.63■□□□□ 0.57
SQSTM1-215ENST00000514093 TRIM64A6NGJ6 449 aa18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 TRIM64BA6NI03 449 aa18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 SMPD2O60906 423 aa18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 C1QAP02745 245 aa18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 PGAM1P18669 254 aa18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 PTMSP20962 102 aa18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 OPRM1P35372 400 aa18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 MSH2P43246 934 aa18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 PPP2R2BQ00005 443 aa18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 ZNF793Q6ZN11 406 aa18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 LUZP2Q86TE4 346 aa18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 KRT78Q8N1N4 520 aa18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 NAT8LQ8N9F0 302 aa18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 RBM24Q9BX46 236 aaKnown RBP18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 PRDM14Q9GZV8 571 aa18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 TLN2Q9Y4G6 2542 aa18.62■□□□□ 0.57
SQSTM1-215ENST00000514093 RTCAO00442 366 aaKnown RBP18.61■□□□□ 0.57
SQSTM1-215ENST00000514093 FGF17O60258 216 aa18.61■□□□□ 0.57
SQSTM1-215ENST00000514093 GOSR1O95249 250 aa18.61■□□□□ 0.57
SQSTM1-215ENST00000514093 IGKV3-11P04433 115 aa18.61■□□□□ 0.57
SQSTM1-215ENST00000514093 FOXF2Q12947 444 aa18.61■□□□□ 0.57
SQSTM1-215ENST00000514093 BICRALQ6AI39 1079 aa18.61■□□□□ 0.57
SQSTM1-215ENST00000514093 TMEM64Q6YI46 380 aa18.61■□□□□ 0.57
SQSTM1-215ENST00000514093 C9orf106Q8NAJ2 232 aa18.61■□□□□ 0.57
SQSTM1-215ENST00000514093 SIMC1Q8NDZ2 872 aa18.61■□□□□ 0.57
SQSTM1-215ENST00000514093 GABPB2Q8TAK5 448 aaPredicted RBP18.61■□□□□ 0.57
SQSTM1-215ENST00000514093 PDLIM5Q96HC4 596 aaKnown RBP18.61■□□□□ 0.57
SQSTM1-215ENST00000514093 DACH2Q96NX9 599 aa18.61■□□□□ 0.57
SQSTM1-215ENST00000514093 GAL3ST4Q96RP7 486 aa18.61■□□□□ 0.57
SQSTM1-215ENST00000514093 ZNF490Q9ULM2 529 aaPredicted RBP18.61■□□□□ 0.57
SQSTM1-215ENST00000514093 HIVEP2P31629 2446 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 SH3D21A4FU49 640 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 MBD3L4A6NDZ8 208 aaPredicted RBP18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 MBD3L3A6NE82 208 aaPredicted RBP18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 MBD3L5A6NJ08 208 aaPredicted RBP18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 SH3BGRLO75368 114 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 TRIM3O75382 744 aaPredicted RBP18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 FBXO45P0C2W1 286 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 COX7A2P14406 83 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms