RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 DPH2Q9BQC3 489 aaPredicted RBP10.79□□□□□ -0.68
TCOF1-211ENST00000513346 NDC1Q9BTX1 674 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 TCF7L1Q9HCS4 588 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 PCDHB11Q9Y5F2 797 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 KLK4Q9Y5K2 254 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 IQCMA0A1B0GVH7 501 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 PPP6CO00743 305 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 SCAMP1O15126 338 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 MTRF1O75570 445 aaKnown RBP10.79□□□□□ -0.68
TCOF1-211ENST00000513346 HIST1H2ABP04908 130 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 RB1P06400 928 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 LAMP2P13473 410 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 PVALBP20472 110 aaPredicted RBP10.79□□□□□ -0.68
TCOF1-211ENST00000513346 CFL1P23528 166 aaKnown RBP10.79□□□□□ -0.68
TCOF1-211ENST00000513346 SSTR4P31391 388 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 CNR2P34972 360 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 MAGEA11P43364 429 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 GBX2P52951 348 aaPredicted RBP10.79□□□□□ -0.68
TCOF1-211ENST00000513346 CREB5Q02930 508 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 LARS2Q15031 903 aaKnown RBP10.79□□□□□ -0.68
TCOF1-211ENST00000513346 KHDRBS2Q5VWX1 349 aaKnown RBP10.79□□□□□ -0.68
TCOF1-211ENST00000513346 TBPL2Q6SJ96 375 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 RNF44Q7L0R7 432 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 HIST3H2AQ7L7L0 130 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 TSPAN33Q86UF1 283 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 SYNPOQ8N3V7 929 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 C7orf57Q8NEG2 295 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 OR2AP1Q8NGE2 309 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 HIST1H2ACQ93077 130 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 FUBP1Q96AE4 644 aaKnown RBP10.79□□□□□ -0.68
TCOF1-211ENST00000513346 IGSF21Q96ID5 467 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 PAAF1Q9BRP4 392 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 RBCK1Q9BYM8 510 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 CALML5Q9NZT1 146 aa10.79□□□□□ -0.68
TCOF1-211ENST00000513346 MAFKO60675 156 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 ZNF623O75123 536 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 GPR32O75388 356 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 BCHEP06276 602 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 PFKLP17858 780 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 DDX6P26196 483 aaKnown RBP eCLIP10.78□□□□□ -0.68
TCOF1-211ENST00000513346 MLLT3P42568 568 aaPredicted RBP10.78□□□□□ -0.68
TCOF1-211ENST00000513346 AP1S2P56377 157 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 GDPD4Q6W3E5 623 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 GDPD3Q7L5L3 318 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 SLC46A3Q7Z3Q1 461 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 CELF5Q8N6W0 485 aaKnown RBP10.78□□□□□ -0.68
TCOF1-211ENST00000513346 B3GNT7Q8NFL0 401 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 RNASE11Q8TAA1 199 aaKnown RBP10.78□□□□□ -0.68
TCOF1-211ENST00000513346 GGHQ92820 318 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 EQTNQ9NQ60 294 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 FARSBQ9NSD9 589 aaKnown RBP10.78□□□□□ -0.68
TCOF1-211ENST00000513346 B3GNT2Q9NY97 397 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 PTTG3PQ9NZH4 202 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 KLHL21Q9UJP4 597 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 USP22Q9UPT9 525 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 ZNF865P0CJ78 1059 aaPredicted RBP10.78□□□□□ -0.68
TCOF1-211ENST00000513346 ADH5P11766 374 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 ARSAP15289 507 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 CSF2RAP15509 400 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 ITGA3P26006 1051 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 COL28A1Q2UY09 1125 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 ARSIQ5FYB1 569 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 SIGIRRQ6IA17 410 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 REEP3Q6NUK4 255 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 GRASPQ7Z6J2 395 aaPredicted RBP10.78□□□□□ -0.68
TCOF1-211ENST00000513346 BADQ92934 168 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 COQ8BQ96D53 544 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 ZBED6CLQ96FA7 236 aaPredicted RBP10.78□□□□□ -0.68
TCOF1-211ENST00000513346 DHRS9Q9BPW9 319 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 TRMT61BQ9BVS5 477 aaKnown RBP10.78□□□□□ -0.68
TCOF1-211ENST00000513346 LMAN2LQ9H0V9 348 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 WNT6Q9Y6F9 365 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 N4BP2Q86UW6 1770 aaPredicted RBP10.78□□□□□ -0.68
TCOF1-211ENST00000513346 LOC285095A0A1B0GVY8 99 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 POLR1CO15160 346 aaPredicted RBP10.78□□□□□ -0.68
TCOF1-211ENST00000513346 ZNF432O94892 652 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 MAGEA12P43365 314 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 ARCN1P48444 511 aaKnown RBP10.78□□□□□ -0.68
TCOF1-211ENST00000513346 GP2P55259 537 aaKnown RBP10.78□□□□□ -0.68
TCOF1-211ENST00000513346 ARF5P84085 180 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 PTCHD3Q3KNS1 767 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 CEACAM20Q6UY09 585 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 ZNF366Q8N895 744 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 PROKR1Q8TCW9 393 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 RIT1Q92963 219 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 EPYCQ99645 322 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 OR2AG1Q9H205 316 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 OR51J1Q9H342 316 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 NTN4Q9HB63 628 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 ANXA2P2A6NMY6 339 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 GTPBP1O00178 669 aaKnown RBP10.78□□□□□ -0.68
TCOF1-211ENST00000513346 FAAHO00519 579 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 CH25HO95992 272 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 ANXA2P07355 339 aaKnown RBP10.78□□□□□ -0.68
TCOF1-211ENST00000513346 CMPK1P30085 196 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 UPP1Q16831 310 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 CYP27C1Q4G0S4 372 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 PRAMEF17Q5VTA0 474 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 GATAD2BQ8WXI9 593 aa10.78□□□□□ -0.68
TCOF1-211ENST00000513346 KCNN1Q92952 543 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms