RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ADAP2Q9NPF8 381 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 POT1Q9NUX5 634 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 COQ4Q9Y3A0 265 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 A0A0G2JLW4 131 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 TCRBV7S2A1N4TA0A589 114 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 LRRC72A6NJI9 287 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 MAGEB4O15481 346 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 ICMTO60725 284 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 JRKO75564 520 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 TP53P04637 393 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 SYPP08247 313 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 GP1BBP13224 206 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 M6PRP20645 277 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 KIAA1211LQ6NV74 962 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 CYS1Q717R9 158 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 CMIPQ8IY22 773 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 RDH10Q8IZV5 341 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 PLD6Q8N2A8 252 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 SLC35F5Q8WV83 523 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 GLYATL1Q969I3 302 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 ADAM7Q9H2U9 754 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 ACP6Q9NPH0 428 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 AIG1Q9NVV5 245 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 PTPRUQ92729 1446 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 CAMSAP1Q5T5Y3 1602 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 UBFD1O14562 309 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 PIP5K1CO60331 668 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 ALDOBP05062 364 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 GJB1P08034 283 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF16P17020 682 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 PTPN2P17706 415 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 TACR2P21452 398 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 RCAN2Q14206 197 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 NANOGP8Q6NSW7 305 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 UNQ6126/PRO20091Q6UXV3 157 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 OR56B4Q8NH76 319 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 RHOXF1Q8NHV9 184 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 HAS1Q92839 578 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF382Q96SR6 550 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 MYOCQ99972 504 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 MICU1Q9BPX6 476 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 B3GNT5Q9BYG0 378 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 NANOGQ9H9S0 305 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 NMUR1Q9HB89 426 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 ZDHHC3Q9NYG2 299 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 ZDHHC2Q9UIJ5 367 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 HAS3O00219 553 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 DFFBO76075 338 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 AKR1A1P14550 325 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 KDELR2P33947 212 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 PTH2RP49190 550 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 GPR143P51810 404 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 NKX2-5P52952 324 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 UBE2KP61086 200 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 DECR1Q16698 335 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF705AQ6ZN79 300 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 GPR142Q7Z601 462 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 CMTM1Q8IZ96 169 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 LFNGQ8NES3 379 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 OR4Q3Q8NH05 313 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 FNDC9Q8TBE3 224 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF558Q96NG5 402 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 HAPLN3Q96S86 360 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 A0A087WZY1 265 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 EEDO75530 441 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 MAP2K4P45985 399 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 LEPRP48357 1165 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 CRHR2Q13324 411 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 FKBP1CQ5VVH2 108 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 TRMT10BQ6PF06 316 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF440Q8IYI8 595 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 CMASQ8NFW8 434 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 OR5B17Q8NGF7 314 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 ACOT11Q8WXI4 607 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 OR5P2Q8WZ92 322 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 TM9SF4Q92544 642 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 HOXB13Q92826 284 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 MCHR1Q99705 422 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 KCNK13Q9HB14 408 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 MCCC2Q9HCC0 563 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 SPATA31A3Q5VYP0 1347 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 ROBO2Q9HCK4 1378 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 TRBV2A0A0J9YWF9 115 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 KCNK2O95069 426 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 OAS1P00973 400 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 AQP2P41181 271 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 TGM4P49221 684 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 KLF1Q13351 362 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 LRP8Q14114 963 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 RAB35Q15286 201 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 SIDT2Q8NBJ9 832 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 OR6Q1Q8NGQ2 317 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 TMEM234Q8WY98 164 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 SPOCK3Q9BQ16 436 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 MRPS30Q9NP92 439 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 ELOVL2Q9NXB9 296 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 CNOT2Q9NZN8 540 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 SCML2Q9UQR0 700 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF850A8MQ14 1090 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 ALX3O95076 343 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms