RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PAFAH1B3Q15102 231 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 SLC39A12Q504Y0 691 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 ARHGAP15Q53QZ3 475 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 LRRN1Q6UXK5 716 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 LIMS2Q7Z4I7 341 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 ZFP41Q8N8Y5 198 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 WDSUB1Q8N9V3 476 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 L3MBTL4Q8NA19 623 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 GTF3AQ92664 365 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 CACNG6Q9BXT2 260 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 ARL6Q9H0F7 186 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 MED9Q9NWA0 146 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 MARCH4Q9P2E8 410 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 C2orf74A8MZ97 194 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 FAM220BPB1ANY3 271 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 MID1O15344 667 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 ARPC5O15511 151 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 SPDEFO95238 335 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 HPXP02790 462 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 FEN1P39748 380 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 UXS1Q8NBZ7 420 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 OR14A16Q8NHC5 309 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 RFT1Q96AA3 541 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 HPDLQ96IR7 371 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 TMEM68Q96MH6 324 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 NANSQ9NR45 359 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 SHROOM3Q8TF72 1996 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 LOC285095A0A1B0GVY8 99 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 GRXCR2A6NFK2 248 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 ANKDD1BA6NHY2 528 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 WASH4PA8MWX3 477 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 PIP5K1CO60331 668 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 S100A8P05109 93 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 NDUFB7P17568 137 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 STK19P49842 368 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 STX4Q12846 297 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 SSX2Q16385 188 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 GCNT6Q5T4J0 391 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 AVPI1Q5T686 147 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 KIAA0930Q6ICG6 404 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 LDLRAD3Q86YD5 345 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 SERPINA12Q8IW75 414 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 ADGRG2Q8IZP9 1017 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 STK40Q8N2I9 435 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 OR9Q2Q8NGE9 314 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 OR52E4Q8NGH9 312 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 GPR150Q8NGU9 434 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 SENP5Q96HI0 755 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 ATOH8Q96SQ7 321 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 DPH2Q9BQC3 489 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 C11orf16Q9NQ32 467 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 ASB1Q9Y576 335 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 LOXHD1Q8IVV2 1947 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 GSAPA4D1B5 854 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 ARHGEF33A8MVX0 844 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 E9PI62 339 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 CDC7O00311 574 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 DCLK1O15075 740 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 ECI2O75521 394 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 RP2O75695 350 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 STBD1O95210 358 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 PIGRP01833 764 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 ACPPP15309 386 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 RORAP35398 523 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 MMP12P39900 470 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 ZP1P60852 638 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 RPS25P62851 125 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 SLC14A1Q13336 389 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 ATG9BQ674R7 924 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 TMEM163Q8TC26 289 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 ELP5Q8TE02 316 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 CHURC1Q8WUH1 139 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 RHOVQ96L33 236 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 POLE3Q9NRF9 147 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 NDUFB11Q9NX14 153 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 DHCR7Q9UBM7 475 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 AAR2Q9Y312 384 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 SIPA1L1O43166 1804 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 ARGFXA6NJG6 315 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 GABRR3A8MPY1 467 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 SULT1A3P0DMM9 295 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 SULT1A4P0DMN0 295 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 NFYAP23511 347 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 ACSL1P33121 698 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 KDELR2P33947 212 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 CNR2P34972 360 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 CDH12P55289 794 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 ERVPABLB-1P60509 514 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 HMGCS1Q01581 520 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 PPIGQ13427 754 aaKnown RBP eCLIP11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 GK2Q14410 553 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 HLXQ14774 488 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 PTGES3Q15185 160 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 PLEKHH3Q7Z736 793 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 PUSL1Q8N0Z8 303 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 ZNF687Q8N1G0 1237 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 OR56A4Q8NGH8 313 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 THAP6Q8TBB0 222 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 PORCNQ9H237 461 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 MED11Q9P086 117 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms