RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 JSRP1Q96MG2 331 aaPredicted RBP12.84□□□□□ -0.35
VARS-227ENST00000489979 EPB41L4BQ9H329 900 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 NT5DC2Q9H857 520 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 PRDM7Q9NQW5 492 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 CSPG4Q6UVK1 2322 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 CLCA1A8K7I4 914 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 LRATO95237 230 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 TTC4O95801 387 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 LY6G6DO95868 133 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 IL2RAP01589 272 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 HPDP32754 393 aaPredicted RBP12.83□□□□□ -0.36
VARS-227ENST00000489979 HNMTP50135 292 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 AGFG1P52594 562 aaKnown RBP12.83□□□□□ -0.36
VARS-227ENST00000489979 CDKL1Q00532 357 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 TBL3Q12788 808 aaKnown RBP12.83□□□□□ -0.36
VARS-227ENST00000489979 DUSP8Q13202 625 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 POU4F3Q15319 338 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 TEDDM1Q5T9Z0 273 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 SHEQ5VZ18 495 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 ADNP2Q6IQ32 1131 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 LACC1Q8IV20 430 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 C9orf40Q8IXQ3 194 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 PPIL6Q8IXY8 311 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 SPC24Q8NBT2 197 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 OR10G3Q8NGC4 313 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 ANKRD9Q96BM1 317 aaPredicted RBP12.83□□□□□ -0.36
VARS-227ENST00000489979 CERS2Q96G23 380 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 F2RL3Q96RI0 385 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 MAPKAP1Q9BPZ7 522 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 YIPF4Q9BSR8 244 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 RBSNQ9H1K0 784 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 LYRM4Q9HD34 91 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 LZTFL1Q9NQ48 299 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 PPANQ9NQ55 473 aaKnown RBP12.83□□□□□ -0.36
VARS-227ENST00000489979 BEX4Q9NWD9 120 aaPredicted RBP12.83□□□□□ -0.36
VARS-227ENST00000489979 QPCTLQ9NXS2 382 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 CORO1CQ9ULV4 474 aaPredicted RBP12.83□□□□□ -0.36
VARS-227ENST00000489979 OARD1Q9Y530 152 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 ARID1AO14497 2285 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 DOCK7Q96N67 2140 aa12.83□□□□□ -0.36
VARS-227ENST00000489979 FAM171A2A8MVW0 826 aa12.82□□□□□ -0.36
VARS-227ENST00000489979 ZNF37AP17032 561 aaPredicted RBP12.82□□□□□ -0.36
VARS-227ENST00000489979 GDF1P27539 372 aa12.82□□□□□ -0.36
VARS-227ENST00000489979 SLC6A12P48065 614 aa12.82□□□□□ -0.36
VARS-227ENST00000489979 TGM3Q08188 693 aa12.82□□□□□ -0.36
VARS-227ENST00000489979 CRYZQ08257 329 aaKnown RBP12.82□□□□□ -0.36
VARS-227ENST00000489979 MSS51Q4VC12 460 aa12.82□□□□□ -0.36
VARS-227ENST00000489979 CCDC137Q6PK04 289 aaKnown RBP12.82□□□□□ -0.36
VARS-227ENST00000489979 ZNF793Q6ZN11 406 aa12.82□□□□□ -0.36
VARS-227ENST00000489979 IGDCC3Q8IVU1 814 aa12.82□□□□□ -0.36
VARS-227ENST00000489979 OR4N5Q8IXE1 308 aa12.82□□□□□ -0.36
VARS-227ENST00000489979 FAM13CQ8NE31 585 aa12.82□□□□□ -0.36
VARS-227ENST00000489979 RHBDF1Q96CC6 855 aa12.82□□□□□ -0.36
VARS-227ENST00000489979 SENP5Q96HI0 755 aaPredicted RBP12.82□□□□□ -0.36
VARS-227ENST00000489979 TIMP4Q99727 224 aa12.82□□□□□ -0.36
VARS-227ENST00000489979 DOHHQ9BU89 302 aa12.82□□□□□ -0.36
VARS-227ENST00000489979 PITHD1Q9GZP4 211 aaPredicted RBP12.82□□□□□ -0.36
VARS-227ENST00000489979 ZNF490Q9ULM2 529 aaPredicted RBP12.82□□□□□ -0.36
VARS-227ENST00000489979 CHCHD2Q9Y6H1 151 aaPredicted RBP12.82□□□□□ -0.36
VARS-227ENST00000489979 TLN2Q9Y4G6 2542 aa12.82□□□□□ -0.36
VARS-227ENST00000489979 A0A1W2PPR1 153 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 EEF1E1-BLOC1S5C9J1V9 151 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 HRKO00198 91 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 EEF1E1O43324 174 aaKnown RBP12.81□□□□□ -0.36
VARS-227ENST00000489979 PRAMEF4O60810 478 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 GOSR1O95249 250 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 HRGP04196 525 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 IGKV3-11P04433 115 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 COX7A2P14406 83 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 KCNC1P48547 511 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 SORDQ00796 357 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 ZNF460Q14592 562 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 TSNQ15631 228 aaKnown RBP12.81□□□□□ -0.36
VARS-227ENST00000489979 RNASEH2BQ5TBB1 312 aaKnown RBP12.81□□□□□ -0.36
VARS-227ENST00000489979 PRAMEF9Q5VWM5 478 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 DGAT2L6Q6ZPD8 337 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 FRA10AC1Q70Z53 315 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 UBE3DQ7Z6J8 389 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 CXorf67Q86X51 503 aaPredicted RBP12.81□□□□□ -0.36
VARS-227ENST00000489979 VWA5B2Q8N398 1253 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 RASGEF1CQ8N431 466 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 NKAPQ8N5F7 415 aaKnown RBP12.81□□□□□ -0.36
VARS-227ENST00000489979 SLC15A4Q8N697 577 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 DOK4Q8TEW6 326 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 ANKRD7Q92527 254 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 PPWD1Q96BP3 646 aaKnown RBP12.81□□□□□ -0.36
VARS-227ENST00000489979 HSPBAP1Q96EW2 488 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 MS4A14Q96JA4 679 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 DGAT2Q96PD7 388 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 KCNC2Q96PR1 638 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 WDR83Q9BRX9 315 aaKnown RBP12.81□□□□□ -0.36
VARS-227ENST00000489979 CAPS2Q9BXY5 557 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 PLAC1Q9HBJ0 212 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 GPRC5BQ9NZH0 403 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 CNIH4Q9P003 139 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 CNOT11Q9UKZ1 510 aaKnown RBP12.81□□□□□ -0.36
VARS-227ENST00000489979 CAMK2AQ9UQM7 478 aa12.81□□□□□ -0.36
VARS-227ENST00000489979 NCF1BA6NI72 391 aaPredicted RBP12.8□□□□□ -0.36
VARS-227ENST00000489979 NCF1CA8MVU1 366 aaPredicted RBP12.8□□□□□ -0.36
VARS-227ENST00000489979 RTCAO00442 366 aaKnown RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms