RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 BCORP1Q8N888 145 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 ANKRD53Q8N9V6 530 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 PLPP5Q8NEB5 264 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 OR5T3Q8NGG3 340 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 SUN3Q8TAQ9 357 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 M1APQ8TC57 530 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 FBXO25Q8TCJ0 367 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 UTP15Q8TED0 518 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 FAR1Q8WVX9 515 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 SEC16BQ96JE7 1060 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 MAGEB10Q96LZ2 347 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 LPAR4Q99677 370 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 ZNF747Q9BV97 191 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 CAPS2Q9BXY5 557 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 UNKQ9C0B0 810 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 PITHD1Q9GZP4 211 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 CAB39LQ9H9S4 337 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 CLK4Q9HAZ1 481 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 KCNK13Q9HB14 408 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 MMP25Q9NPA2 562 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 LANCL2Q9NS86 450 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 OLAHQ9NV23 265 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 PLA2G3Q9NZ20 509 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 STMN3Q9NZ72 180 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 WWOXQ9NZC7 414 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 GPRC5BQ9NZH0 403 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 ABI3Q9P2A4 366 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 A0A088AWK7 358 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 OR5H15A6NDH6 313 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 A8MUI8 341 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 PSMD12O00232 456 aaPredicted RBP6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 E2F3O00716 465 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 CLGNO14967 610 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 PHGDHO43175 533 aaKnown RBP6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 PRAMEF2O60811 474 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 B4GALT2O60909 372 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 RASAL1O95294 804 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 F10P00742 488 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 SMIM10L1P0DMW3 83 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 RNH1P13489 461 aaKnown RBP6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 CD1DP15813 335 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 ZNF10P21506 573 aaPredicted RBP6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 GGT5P36269 586 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 HNF4AP41235 474 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 MAGEA4P43358 317 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 HSPA7P48741 367 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 TAS2R50P59544 299 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 RAB8AP61006 207 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 OLR1P78380 273 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 BTN3A2P78410 334 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 NAB1Q13506 487 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 OR4D1Q15615 310 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 PDK4Q16654 411 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 MEP1AQ16819 746 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 C18orf21Q32NC0 220 aaPredicted RBP6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 KBTBD12Q3ZCT8 623 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 ACER2Q5QJU3 275 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 H3F3CQ6NXT2 135 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 C8orf74Q6P047 294 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 ZDHHC24Q6UX98 284 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 TMIGD1Q6UXZ0 262 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 QSOX2Q6ZRP7 698 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 RAPH1Q70E73 1250 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 TBC1D1Q86TI0 1168 aaPredicted RBP6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 SLC5A8Q8N695 610 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 PPM1NQ8N819 430 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 SNX31Q8N9S9 440 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 PDPRQ8NCN5 879 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 CREB3L4Q8TEY5 395 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 CCT6BQ92526 530 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 TSLPQ969D9 159 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 KIAA1191Q96A73 305 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 ZBTB8AQ96BR9 441 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 PTCD3Q96EY7 689 aaKnown RBP6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 SMIM10Q96HG1 83 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 FAR2Q96K12 515 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 UBXN10Q96LJ8 280 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 ZNF354BQ96LW1 612 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 C5orf34Q96MH7 638 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 PTCHD1Q96NR3 888 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 SLX1AQ9BQ83 275 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 TMEM79Q9BSE2 394 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 EHD1Q9H4M9 534 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 KLHL31Q9H511 634 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 NT5DC2Q9H857 520 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 DNAJC11Q9NVH1 559 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 CD274Q9NZQ7 290 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 COPG2Q9UBF2 871 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 PLEKHB1Q9UF11 243 aaPredicted RBP6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 MYO7BQ6PIF6 2116 aa6.37□□□□□ -1.39
CCDC88A-213ENST00000476903 CTAGE15A4D2H0 777 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 LRIT2A6NDA9 550 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 WIPF3A6NGB9 483 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 ANKDD1BA6NHY2 528 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 SAGE2PA6NJ88 616 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 CYSRT1A8MQ03 144 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 TAPBPO15533 448 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 ERI3O43414 337 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 CCNT2O60583 730 aaKnown RBP6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms