RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 PCMT1P22061 227 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 ACTR1BP42025 376 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 RABIFP47224 123 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 CCT3P49368 545 aaKnown RBP9.29□□□□□ -0.92
USP39-214ENST00000474572 PLA2G16P53816 162 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 CASP9P55211 416 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 TPD52P55327 224 aaPredicted RBP9.29□□□□□ -0.92
USP39-214ENST00000474572 SRP54P61011 504 aaKnown RBP9.29□□□□□ -0.92
USP39-214ENST00000474572 ACTR1AP61163 376 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 STXBP1P61764 594 aaKnown RBP9.29□□□□□ -0.92
USP39-214ENST00000474572 KCNC4Q03721 635 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 NPRL3Q12980 569 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 HSPB3Q12988 150 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 SLAMF1Q13291 335 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 DYNC1I2Q13409 638 aaKnown RBP9.29□□□□□ -0.92
USP39-214ENST00000474572 TUBA3CQ13748 450 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 LAPTM4AQ15012 233 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 MICAQ29983 383 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 SLC48A1Q6P1K1 146 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 EP400NLQ6ZTU2 488 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 TSPYL5Q86VY4 417 aaPredicted RBP9.29□□□□□ -0.92
USP39-214ENST00000474572 CLVS1Q8IUQ0 354 aaPredicted RBP9.29□□□□□ -0.92
USP39-214ENST00000474572 ACOT4Q8N9L9 421 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 GPR32P1Q8NGA4 272 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 OR10G2Q8NGC3 310 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 CCL4L1Q8NHW4 92 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 GPBAR1Q8TDU6 330 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 GIPC3Q8TF64 312 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 SLC38A5Q8WUX1 472 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 LCN9Q8WX39 176 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 FAM3CQ92520 227 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 TSACCQ96A04 125 aaPredicted RBP9.29□□□□□ -0.92
USP39-214ENST00000474572 MOAP1Q96BY2 351 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 ISOC1Q96CN7 298 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 THAP11Q96EK4 314 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 TMEM19Q96HH6 336 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 MAGED4Q96JG8 741 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 HRASLS5Q96KN8 279 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 SLC35G5Q96KT7 338 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 OR2A14Q96R47 310 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 SIGLEC11Q96RL6 698 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 RSPO3Q9BXY4 272 aaPredicted RBP9.29□□□□□ -0.92
USP39-214ENST00000474572 TMEM168Q9H0V1 697 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 DUSP21Q9H596 190 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 CXorf21Q9HAI6 301 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 KRT84Q9NSB2 600 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 POT1Q9NUX5 634 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 EXD2Q9NVH0 621 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 PAK1IP1Q9NWT1 392 aaPredicted RBP9.29□□□□□ -0.92
USP39-214ENST00000474572 C5AR2Q9P296 337 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 POFUT2Q9Y2G5 429 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 SNX11Q9Y5W9 270 aa9.29□□□□□ -0.92
USP39-214ENST00000474572 GPC6Q9Y625 555 aaPredicted RBP9.29□□□□□ -0.92
USP39-214ENST00000474572 TMEM265A0A087WTH1 108 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 A0A0G2JN53 185 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 PRAMEF27A3QJZ7 478 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 CHURC1-FNTBB4DL54 471 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 PRAMEF26H0Y7S4 382 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 SCAMP1O15126 338 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 MBTPS2O43462 519 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 TRMUO75648 421 aaKnown RBP9.28□□□□□ -0.92
USP39-214ENST00000474572 RASGRP1O95267 797 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 AIFM1O95831 613 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 ANGPTL1O95841 491 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 BCHEP06276 602 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 RHCEP18577 417 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 TNFRSF1BP20333 461 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 CBLP22681 906 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 ACVR2AP27037 513 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 NTSP30990 170 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 NUDT1P36639 197 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 KCNJ5P48544 419 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 KHKP50053 298 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 UBE2IP63279 158 aaKnown RBP9.28□□□□□ -0.92
USP39-214ENST00000474572 SLC35A2P78381 396 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 TFF2Q03403 129 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 DUSP2Q05923 314 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 TGM3Q08188 693 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 PUM1Q14671 1186 aaKnown RBP eCLIP9.28□□□□□ -0.92
USP39-214ENST00000474572 MAD2L1BPQ15013 274 aaPredicted RBP9.28□□□□□ -0.92
USP39-214ENST00000474572 PRRT3Q5FWE3 981 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 PRAMEF8Q5VWM4 474 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 PRAMEF7Q5VXH5 474 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 KIAA0895LQ68EN5 471 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 FAM180BQ6P0A1 224 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 DHRS4L2Q6PKH6 230 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 B3GNT8Q7Z7M8 397 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 GALNT5Q7Z7M9 940 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 ASPGQ86U10 573 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 CCDC71Q8IV32 467 aaPredicted RBP9.28□□□□□ -0.92
USP39-214ENST00000474572 SLC22A18ASQ8N1D0 253 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 ATG16L2Q8NAA4 619 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 OR4E2Q8NGC2 313 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 OR8K5Q8NH50 307 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 RASSF5Q8WWW0 418 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 JPH3Q8WXH2 748 aaPredicted RBP9.28□□□□□ -0.92
USP39-214ENST00000474572 MUL1Q969V5 352 aa9.28□□□□□ -0.92
USP39-214ENST00000474572 C12orf43Q96C57 262 aaKnown RBP9.28□□□□□ -0.92
USP39-214ENST00000474572 CNRIP1Q96F85 164 aaPredicted RBP9.28□□□□□ -0.92
USP39-214ENST00000474572 C10orf90Q96M02 699 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms