RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 PTGER1P34995 402 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 SOX3P41225 446 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 MAGEA12P43365 314 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 SERPINB9P50453 376 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 HK2P52789 917 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 HNRNPH2P55795 449 aaKnown RBP14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 ADORA2A-AS1P86434 159 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 TNFRSF17Q02223 184 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 C18orf63Q68DL7 685 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 Q6ZPB1 254 aaPredicted RBP14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 GPR180Q86V85 440 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 ATP6V1E2Q96A05 226 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 ISL2Q96A47 359 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 RASL10BQ96S79 203 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 RPF2Q9H7B2 306 aaKnown RBP14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 NOL11Q9H8H0 719 aaKnown RBP14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 XPR1Q9UBH6 696 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 COPS7AQ9UBW8 275 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 PHF11Q9UIL8 331 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 PHF3Q92576 2039 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 TRIM49D1C9J1S8 452 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 HS6ST1O60243 411 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 CDC40O60508 579 aaKnown RBP eCLIP14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 SMIM24O75264 130 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 EEDO75530 441 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 KRT38O76015 456 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 ETHE1O95571 254 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 TUBB4AP04350 444 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 RBP1P09455 135 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 COX7A2P14406 83 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 PTX3P26022 381 aaPredicted RBP14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 PTGER4P35408 488 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 STT3AP46977 705 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 NEK2P51955 445 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 CCNG1P51959 295 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 RNF4P78317 190 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 FOLH1Q04609 750 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 CDSNQ15517 529 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 GLE1Q53GS7 698 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 CYP20A1Q6UW02 462 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 NCCRP1Q6ZVX7 275 aaPredicted RBP14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 GDF7Q7Z4P5 450 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 GPALPP1Q8IXQ4 340 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 ZCCHC7Q8N3Z6 543 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 L3MBTL4Q8NA19 623 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 PSD4Q8NDX1 1056 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 OR52B6Q8NGF0 335 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 DOK4Q8TEW6 326 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 DCAKDQ8WVC6 231 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 PPWD1Q96BP3 646 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 MTFMTQ96DP5 389 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 CHST11Q9NPF2 352 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 MS4A12Q9NXJ0 267 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 TSC22D4Q9Y3Q8 395 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 ATG4BQ9Y4P1 393 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 NCKAP5O14513 1909 aa14.58□□□□□ -0.08
CCDC88B-205ENST00000472524 EXPH5Q8NEV8 1989 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 A0A087WUV0 522 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 G3V3Y1 287 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 OR7A17O14581 309 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 CLDN9O95484 217 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 COX6B1P14854 86 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 TLX1P31314 330 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 BSGP35613 385 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 BUD31P41223 144 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 IGLV3-21P80748 117 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 PLIN5Q00G26 463 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 TSNAXIP1Q2TAA8 658 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 ZNF750Q32MQ0 723 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 XKRXQ6PP77 449 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 C3P1Q6ZMU1 363 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 CHERPQ8IWX8 916 aaKnown RBP14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 OR5L2Q8NGL0 311 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 WDR20Q8TBZ3 569 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 ZNF721Q8TF20 911 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 AGAP11Q8TF27 550 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 LURAP1Q96LR2 239 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 NSUN5Q96P11 429 aaKnown RBP14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 ZNF717Q9BY31 904 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 TRIM8Q9BZR9 551 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 DEPPQ9NTK1 212 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 LYARQ9NX58 379 aaKnown RBP14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 PCTPQ9UKL6 214 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 TMCO1Q9UM00 188 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 MEMO1Q9Y316 297 aa14.57□□□□□ -0.08
CCDC88B-205ENST00000472524 ANKRD17O75179 2603 aaKnown RBP14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 A0A0A6YYD5 115 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 A0A0G2JMM0 328 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 A0A1B0GTH9 108 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 A0A1W2PPB8 328 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 A0A1W2PRS3 328 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 PINLYPA6NC86 204 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 GLOD5A6NK44 160 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 KIR3DP1A8MWS1 328 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 STX16-NPEPL1H3BU86 382 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 C19orf84I3L1E1 186 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 HRKO00198 91 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 STX16O14662 325 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 PRRG2O14669 202 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 DYRK3O43781 588 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms