RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 CH25HO95992 272 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 GSTM1P09488 218 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 CD72P21854 359 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 CBLP22681 906 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 PDHA2P29803 388 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 PPM1AP35813 382 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 MAN2A2P49641 1150 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 CRISP1P54107 249 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 RAB8AP61006 207 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 FBXO43Q4G163 708 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 CRTC2Q53ET0 693 aaPredicted RBP11.84□□□□□ -0.51
HDAC4-208ENST00000463007 TTC23LQ6PF05 361 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 AGTRAPQ6RW13 159 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 ZNF557Q8N988 423 aaPredicted RBP11.84□□□□□ -0.51
HDAC4-208ENST00000463007 OR7G1Q8NGA0 311 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 ASB11Q8WXH4 323 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 WFDC6Q9BQY6 131 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 RACGAP1Q9H0H5 632 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 SUV39H2Q9H5I1 410 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 SSR3Q9UNL2 185 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 HSPB11Q9Y547 144 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 SERTM1A2A2V5 107 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 FADS2P1A8MWK0 482 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 C5orf58C9J3I9 102 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 PLOD3O60568 738 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 ALPPL2P10696 532 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 JUPP14923 745 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 IDSP22304 550 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 SNRPD1P62314 119 aaKnown RBP11.84□□□□□ -0.51
HDAC4-208ENST00000463007 HTRA4P83105 476 aaPredicted RBP11.84□□□□□ -0.51
HDAC4-208ENST00000463007 CLEC12AQ5QGZ9 265 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 SDE2Q6IQ49 451 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 NOXA1Q86UR1 476 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 ADIPOR2Q86V24 386 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 YIPF7Q8N8F6 280 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 OR7G3Q8NG95 312 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 JPH3Q8WXH2 748 aaPredicted RBP11.84□□□□□ -0.51
HDAC4-208ENST00000463007 CLP1Q92989 425 aaKnown RBP11.84□□□□□ -0.51
HDAC4-208ENST00000463007 NEIL2Q969S2 332 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 TRIM43Q96BQ3 446 aaPredicted RBP11.84□□□□□ -0.51
HDAC4-208ENST00000463007 TBC1D17Q9HA65 648 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 UCKL1Q9NWZ5 548 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 CCDC59Q9P031 241 aaKnown RBP11.84□□□□□ -0.51
HDAC4-208ENST00000463007 TSPAN11A1L157 253 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 ARHGEF33A8MVX0 844 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 GFYI3L273 518 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 SEMG1P04279 462 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 HBQ1P09105 142 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 CLTBP09497 229 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 IL12RB1P42701 662 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 CSNK2BP67870 215 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 MLLT1Q03111 559 aaPredicted RBP11.83□□□□□ -0.51
HDAC4-208ENST00000463007 HSPB3Q12988 150 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 PIN1Q13526 163 aaPredicted RBP11.83□□□□□ -0.51
HDAC4-208ENST00000463007 PLET1Q6UQ28 207 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 DPY19L3Q6ZPD9 716 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 LRRC70Q7Z2Q7 622 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 LHFPL3Q86UP9 236 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 PHF21AQ96BD5 680 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 FCRL1Q96LA6 429 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 COQ7Q99807 217 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 YIPF4Q9BSR8 244 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 SLC12A9Q9BXP2 914 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 ABCG4Q9H172 646 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 ANKHQ9HCJ1 492 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 MIEF1Q9NQG6 463 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 TMCC3Q9ULS5 477 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 IRAK3Q9Y616 596 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 MAU2Q9Y6X3 613 aa11.83□□□□□ -0.51
HDAC4-208ENST00000463007 LOC102723532A0A0G2JNH3 316 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 C12orf71A8MTZ7 269 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 CAPN5O15484 640 aaPredicted RBP11.83□□□□□ -0.52
HDAC4-208ENST00000463007 SCO1O75880 301 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 NTN1O95631 604 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 SERPIND1P05546 499 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 C8AP07357 584 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 CSF2RAP15509 400 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 IL1RNP18510 177 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 GPC1P35052 558 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 SPINT3P49223 89 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 PRKAG1P54619 331 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 GPAT3Q53EU6 434 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 TMEM215Q68D42 235 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 ZNF57Q68EA5 555 aaPredicted RBP11.83□□□□□ -0.52
HDAC4-208ENST00000463007 Q6ZVU0 165 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 TMEM25Q86YD3 366 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 ELMOD2Q8IZ81 293 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 FAM9CQ8IZT9 166 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 CHST14Q8NCH0 376 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 DENND6BQ8NEG7 585 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 DNAJB8Q8NHS0 232 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 PPCDCQ96CD2 204 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 OR4K3Q96R72 315 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 TSSK6Q9BXA6 273 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 B4GALT6Q9UBX8 382 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 SH2B3Q9UQQ2 575 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 CMAHPQ9Y471 501 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 V9GYH0 126 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 MYO9BQ13459 2157 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 KIAA1549LQ6ZVL6 1849 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms