RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 PSD4Q8NDX1 1056 aa19.24■□□□□ 0.67
SDC1-205ENST00000447124 OR52N2Q8NGI0 321 aa19.24■□□□□ 0.67
SDC1-205ENST00000447124 OR8K3Q8NH51 312 aa19.24■□□□□ 0.67
SDC1-205ENST00000447124 ASB15Q8WXK1 588 aa19.24■□□□□ 0.67
SDC1-205ENST00000447124 MARVELD3Q96A59 401 aa19.24■□□□□ 0.67
SDC1-205ENST00000447124 PHF21BQ96EK2 531 aa19.24■□□□□ 0.67
SDC1-205ENST00000447124 CDK15Q96Q40 435 aa19.24■□□□□ 0.67
SDC1-205ENST00000447124 PAFAH2Q99487 392 aa19.24■□□□□ 0.67
SDC1-205ENST00000447124 RPF2Q9H7B2 306 aaKnown RBP19.24■□□□□ 0.67
SDC1-205ENST00000447124 NOL11Q9H8H0 719 aaKnown RBP19.24■□□□□ 0.67
SDC1-205ENST00000447124 TIMMDC1Q9NPL8 285 aa19.24■□□□□ 0.67
SDC1-205ENST00000447124 HPF1Q9NWY4 346 aa19.24■□□□□ 0.67
SDC1-205ENST00000447124 PSD3Q9NYI0 1048 aa19.24■□□□□ 0.67
SDC1-205ENST00000447124 ERVK-11Q9UQG0 969 aa19.24■□□□□ 0.67
SDC1-205ENST00000447124 TNPO3Q9Y5L0 923 aaKnown RBP19.24■□□□□ 0.67
SDC1-205ENST00000447124 ZNF407Q9C0G0 2248 aa19.24■□□□□ 0.67
SDC1-205ENST00000447124 A0A0A6YYD5 115 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 A0A0G2JMM0 328 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 A0A1B0GTH9 108 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 A0A1W2PPB8 328 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 A0A1W2PR48 441 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 A0A1W2PRS3 328 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 KIR3DP1A8MWS1 328 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 INHBAP08476 426 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 RBP1P09455 135 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 ABOP16442 354 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 HTR1EP28566 365 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 FOLH1Q04609 750 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 ZNF630Q2M218 657 aaPredicted RBP19.23■□□□□ 0.67
SDC1-205ENST00000447124 XKRXQ6PP77 449 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 C3P1Q6ZMU1 363 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 BNC2Q6ZN30 1099 aaPredicted RBP19.23■□□□□ 0.67
SDC1-205ENST00000447124 CEP128Q6ZU80 1094 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 TICAM1Q8IUC6 712 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 GPALPP1Q8IXQ4 340 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 OR52B6Q8NGF0 335 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 AGAP11Q8TF27 550 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 DCAKDQ8WVC6 231 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 TANKQ92844 425 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 MTFMTQ96DP5 389 aaKnown RBP19.23■□□□□ 0.67
SDC1-205ENST00000447124 SCYL1Q96KG9 808 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 NSUN5Q96P11 429 aaKnown RBP19.23■□□□□ 0.67
SDC1-205ENST00000447124 FMO2Q99518 471 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 DDX31Q9H8H2 851 aaKnown RBP19.23■□□□□ 0.67
SDC1-205ENST00000447124 ZBTB26Q9HCK0 441 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 MS4A12Q9NXJ0 267 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 ABCA12Q86UK0 2595 aa19.23■□□□□ 0.67
SDC1-205ENST00000447124 LRBAP50851 2863 aa19.22■□□□□ 0.67
SDC1-205ENST00000447124 POC1B-GALNT4F8VUJ3 575 aa19.22■□□□□ 0.67
SDC1-205ENST00000447124 FOXE1O00358 373 aaPredicted RBP19.22■□□□□ 0.67
SDC1-205ENST00000447124 TFECO14948 347 aaPredicted RBP19.22■□□□□ 0.67
SDC1-205ENST00000447124 CLDN9O95484 217 aa19.22■□□□□ 0.67
SDC1-205ENST00000447124 IGKV3-11P04433 115 aa19.22■□□□□ 0.67
SDC1-205ENST00000447124 ARFIP1P53367 373 aa19.22■□□□□ 0.67
SDC1-205ENST00000447124 TNFRSF17Q02223 184 aa19.22■□□□□ 0.67
SDC1-205ENST00000447124 CUL3Q13618 768 aa19.22■□□□□ 0.67
SDC1-205ENST00000447124 PIGGQ5H8A4 983 aa19.22■□□□□ 0.67
SDC1-205ENST00000447124 METTL2BQ6P1Q9 378 aaKnown RBP19.22■□□□□ 0.67
SDC1-205ENST00000447124 TMEM151AQ8N4L1 468 aa19.22■□□□□ 0.67
SDC1-205ENST00000447124 DGAT2Q96PD7 388 aa19.22■□□□□ 0.67
SDC1-205ENST00000447124 TSPYL1Q9H0U9 437 aa19.22■□□□□ 0.67
SDC1-205ENST00000447124 DEFB127Q9H1M4 99 aa19.22■□□□□ 0.67
SDC1-205ENST00000447124 PLSCR2Q9NRY7 297 aa19.22■□□□□ 0.67
SDC1-205ENST00000447124 DNAJC13O75165 2243 aa19.22■□□□□ 0.67
SDC1-205ENST00000447124 EML6Q6ZMW3 1958 aa19.22■□□□□ 0.67
SDC1-205ENST00000447124 G3V3Y1 287 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 PDE9AO76083 593 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 TUBB4AP04350 444 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 SBK3P0C264 359 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 CTAGE8P0CG41 777 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 SERPINB9P50453 376 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 GLE1Q53GS7 698 aaKnown RBP19.21■□□□□ 0.67
SDC1-205ENST00000447124 FAM219BQ5XKK7 198 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 RPS27LQ71UM5 84 aaKnown RBP19.21■□□□□ 0.67
SDC1-205ENST00000447124 CTAGE4Q8IX94 777 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 C9orf40Q8IXQ3 194 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 MNS1Q8NEH6 495 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 OR2M7Q8NG81 312 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 OR5L2Q8NGL0 311 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 REPS1Q96D71 796 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 RBM18Q96H35 190 aaKnown RBP19.21■□□□□ 0.67
SDC1-205ENST00000447124 DMRTA2Q96SC8 542 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 CENPKQ9BS16 269 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 NTMT1Q9BV86 223 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 XPR1Q9UBH6 696 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 PHF11Q9UIL8 331 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 PCTPQ9UKL6 214 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 MYO9AB2RTY4 2548 aa19.21■□□□□ 0.67
SDC1-205ENST00000447124 A0A1B0GTL3 188 aa19.2■□□□□ 0.66
SDC1-205ENST00000447124 A0A1W2PS29 197 aa19.2■□□□□ 0.66
SDC1-205ENST00000447124 GLOD5A6NK44 160 aa19.2■□□□□ 0.66
SDC1-205ENST00000447124 TRIM49D1C9J1S8 452 aa19.2■□□□□ 0.66
SDC1-205ENST00000447124 STX16-NPEPL1H3BU86 382 aa19.2■□□□□ 0.66
SDC1-205ENST00000447124 PPP6CO00743 305 aa19.2■□□□□ 0.66
SDC1-205ENST00000447124 STX16O14662 325 aa19.2■□□□□ 0.66
SDC1-205ENST00000447124 GPR75O95800 540 aa19.2■□□□□ 0.66
SDC1-205ENST00000447124 GBAP04062 536 aa19.2■□□□□ 0.66
SDC1-205ENST00000447124 FAM58BPP0C7Q3 252 aa19.2■□□□□ 0.66
SDC1-205ENST00000447124 COL6A2P12110 1019 aa19.2■□□□□ 0.66
SDC1-205ENST00000447124 ALOX15P16050 662 aaPredicted RBP19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms