RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ABHD11Q8NFV4 315 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 OR56A3Q8NH54 315 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 CHTF18Q8WVB6 975 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 TEFMQ96QE5 360 aaKnown RBP7.96□□□□□ -1.14
CD44-208ENST00000428726 VPS35Q96QK1 796 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 RBM4BQ9BQ04 359 aaKnown RBP7.96□□□□□ -1.14
CD44-208ENST00000428726 RBM4Q9BWF3 364 aaKnown RBP7.96□□□□□ -1.14
CD44-208ENST00000428726 REEP4Q9H6H4 257 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 USE1Q9NZ43 259 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 DNAJC27Q9NZQ0 273 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 DKK3Q9UBP4 350 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 ZNF229Q9UJW7 825 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 DNMT3AQ9Y6K1 912 aaPredicted RBP7.96□□□□□ -1.14
CD44-208ENST00000428726 PLXNA2O75051 1894 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 LRRK1Q38SD2 2015 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 DCHS1Q96JQ0 3298 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 TRBV4-1A0A0J9YWV2 114 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 C5orf58C9J3I9 102 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 KPNA4O00629 521 aaPredicted RBP7.95□□□□□ -1.14
CD44-208ENST00000428726 SLC28A2O43868 658 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 FUT1P19526 365 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 HPCAL1P37235 193 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 ISL1P61371 349 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 ERV3-1Q14264 604 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 LRRC32Q14392 662 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 ZNF829Q3KNS6 432 aaPredicted RBP7.95□□□□□ -1.14
CD44-208ENST00000428726 DEFB134Q4QY38 66 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 TMEM196Q5HYL7 178 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 PAQR6Q6TCH4 344 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 ZNF793Q6ZN11 406 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 Q6ZS52 159 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 LGI4Q8N135 537 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 ZCCHC7Q8N3Z6 543 aaKnown RBP7.95□□□□□ -1.14
CD44-208ENST00000428726 OR4D11Q8NGI4 311 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 SMAP2Q8WU79 429 aaPredicted RBP7.95□□□□□ -1.14
CD44-208ENST00000428726 STARD8Q92502 1023 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 BORCS5Q969J3 196 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 RAD51AP1Q96B01 352 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 METTL2AQ96IZ6 378 aaKnown RBP7.95□□□□□ -1.14
CD44-208ENST00000428726 OR52A5Q9H2C5 316 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 ZCCHC3Q9NUD5 404 aaKnown RBP7.95□□□□□ -1.14
CD44-208ENST00000428726 NDUFAF4Q9P032 175 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 TBC1D29Q9UFV1 150 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 C3orf18Q9UK00 162 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 POU2F3Q9UKI9 436 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 ATG4BQ9Y4P1 393 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 IGKV1-8A0A0C4DH67 115 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 ANHXE9PGG2 379 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 M0R3G1 203 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 HAT1O14929 419 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 KDM1AO60341 852 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 CYP7B1O75881 506 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 CCNDBP1O95273 360 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 SRPRAP08240 638 aaKnown RBP7.95□□□□□ -1.14
CD44-208ENST00000428726 FURINP09958 794 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 HSD3B1P14060 373 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 HOXB2P14652 356 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 HSD3B2P26439 372 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 KRT20P35900 424 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 BCAP31P51572 246 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 KCNJ10P78508 379 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 MXD1Q05195 221 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 DOC2BQ14184 412 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 C6orf132Q5T0Z8 1188 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 BROXQ5VW32 411 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 PAGE2Q7Z2X7 111 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 SERPINA11Q86U17 422 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 CCDC103Q8IW40 242 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 KLHDC8AQ8IYD2 350 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 AQP11Q8NBQ7 271 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 OR5T3Q8NGG3 340 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 OR5K1Q8NHB7 308 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 NEURL2Q9BR09 285 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 FAM117AQ9C073 453 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 C6orf62Q9GZU0 229 aaPredicted RBP7.95□□□□□ -1.14
CD44-208ENST00000428726 AICDAQ9GZX7 198 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 EXOSC4Q9NPD3 245 aaKnown RBP7.95□□□□□ -1.14
CD44-208ENST00000428726 IL1RAPQ9NPH3 570 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 GIN1Q9NXP7 522 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 EHD3Q9NZN3 535 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 MKLN1Q9UL63 735 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 SAMD4AQ9UPU9 718 aaKnown RBP7.95□□□□□ -1.14
CD44-208ENST00000428726 TSC22D4Q9Y3Q8 395 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 TMEM229AB2RXF0 380 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 C1QTNF3-AMACRE9PGA6 284 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 H0YIV9 168 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 HCRTR1O43613 425 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 OR10H3O60404 316 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 LDB3O75112 727 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 SEMA7AO75326 666 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 GASTP01350 101 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 ADRA2AP08913 450 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 FCARP24071 287 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 AVPR1BP47901 424 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 NCBP2P52298 156 aaKnown RBP eCLIP7.95□□□□□ -1.14
CD44-208ENST00000428726 BTN3A2P78410 334 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 PCDH1Q08174 1060 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 SLAMF1Q13291 335 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 GPAT3Q53EU6 434 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 RBM48Q5RL73 367 aaKnown RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms