RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 DHCR7Q9UBM7 475 aaKnown RBP16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 CACNA1BQ00975 2339 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 SCN2AQ99250 2005 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 MED19A0JLT2 244 aaPredicted RBP16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 CLDN4O14493 209 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 POLR1CO15160 346 aaPredicted RBP16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 PGRMC2O15173 223 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 DNAJA2O60884 412 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 SCN2BO60939 215 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 MED26O95402 600 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 TGM1P22735 817 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 ME2P23368 584 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 SLC6A2P23975 617 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 MPIP34949 423 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 CHI3L1P36222 383 aaPredicted RBP16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 IL11RAQ14626 422 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 C16orf72Q14CZ0 275 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 NANOGP8Q6NSW7 305 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 FAM180BQ6P0A1 224 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 ANGPTL8Q6UXH0 198 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 TANKQ92844 425 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 ANKRD27Q96NW4 1050 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 ECSITQ9BQ95 431 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 NANOGQ9H9S0 305 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 SIDT1Q9NXL6 827 aaKnown RBP16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 VAPAQ9P0L0 249 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 TMEM181Q9P2C4 612 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 CORO2BQ9UQ03 480 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 PCDHB14Q9Y5E9 798 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 SNX8Q9Y5X2 465 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 MAU2Q9Y6X3 613 aa16.15■□□□□ 0.18
CCDC28B-202ENST00000421922 H3BMH7 237 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 CDKN2CP42773 168 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 MTPNP58546 118 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 MAT1AQ00266 395 aaKnown RBP16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 C1orf189Q5VU69 101 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 C1orf146Q5VVC0 180 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 C8orf82Q6P1X6 216 aaPredicted RBP16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 PIP4P1Q86T03 277 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 DTWD1Q8N5C7 304 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 RNF148Q8N7C7 305 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 DEFB124Q8NES8 71 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 OR51Q1Q8NH59 317 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 UCN3Q969E3 161 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 TMEM125Q96AQ2 219 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 DEPDC7Q96QD5 511 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 RBCK1Q9BYM8 510 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 RAD21L1Q9H4I0 556 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 ZNF304Q9HCX3 659 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 SEMA3GQ9NS98 782 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 OCIAD1Q9NX40 245 aa16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 NUP214P35658 2090 aaPredicted RBP16.14■□□□□ 0.17
CCDC28B-202ENST00000421922 ZCCHC18P0CG32 403 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 C8orf89P0DMQ9 161 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 TCN1P20061 433 aaPredicted RBP16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 FEN1P39748 380 aaKnown RBP16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 XCR1P46094 333 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 OR1D4P47884 311 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 XKP51811 444 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 PCBP4P57723 403 aaKnown RBP16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 EEFSECP57772 596 aaKnown RBP16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 HBA1P69905 142 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 INSM1Q01101 510 aaPredicted RBP16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 SLC13A2Q13183 592 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 DSG2Q14126 1118 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 MLC1Q15049 377 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 MPEG1Q2M385 716 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 SPATS1Q496A3 300 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 GTDC1Q4AE62 458 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 RUNDC3AQ59EK9 446 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 PIGGQ5H8A4 983 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 RABL3Q5HYI8 236 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 MFSD4BQ5TF39 518 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 PRAMEF17Q5VTA0 474 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 SZRD1Q7Z422 152 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 SLC15A3Q8IY34 581 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 ZNF595Q8IYB9 648 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 LRRC25Q8N386 305 aaPredicted RBP16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 UTP4Q969X6 686 aaKnown RBP16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 TBC1D20Q96BZ9 403 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 KCTD14Q9BQ13 255 aaPredicted RBP16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 SLC35A5Q9BS91 424 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 ABCD2Q9UBJ2 740 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 TRPC4Q9UBN4 977 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 BCAP29Q9UHQ4 241 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 PACSIN3Q9UKS6 424 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 CES1P1Q9UKY3 287 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 MAP4K5Q9Y4K4 846 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 NCOR2Q9Y618 2525 aa16.13■□□□□ 0.17
CCDC28B-202ENST00000421922 RNF103-CHMP3A0A140T963 221 aa16.12■□□□□ 0.17
CCDC28B-202ENST00000421922 CLIC1O00299 241 aa16.12■□□□□ 0.17
CCDC28B-202ENST00000421922 CYR61O00622 381 aa16.12■□□□□ 0.17
CCDC28B-202ENST00000421922 NME4O00746 187 aa16.12■□□□□ 0.17
CCDC28B-202ENST00000421922 HYAL3O43820 417 aaPredicted RBP16.12■□□□□ 0.17
CCDC28B-202ENST00000421922 B4GALT2O60909 372 aa16.12■□□□□ 0.17
CCDC28B-202ENST00000421922 DNAJB6O75190 326 aa16.12■□□□□ 0.17
CCDC28B-202ENST00000421922 BMP10O95393 424 aa16.12■□□□□ 0.17
CCDC28B-202ENST00000421922 KRT75O95678 551 aa16.12■□□□□ 0.17
CCDC28B-202ENST00000421922 UQCRC2P22695 453 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms