RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 AGXTP21549 392 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 XCR1P46094 333 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 IGLV3-21P80748 117 aaPredicted RBP13.41□□□□□ -0.26
SF3B1-204ENST00000414963 BIKQ13323 160 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 COL9A2Q14055 689 aaPredicted RBP13.41□□□□□ -0.26
SF3B1-204ENST00000414963 MMEL1Q495T6 779 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 PAGE3Q5JUK9 113 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 ARHGAP40Q5TG30 622 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 REP15Q6BDI9 236 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 IGF2-ASQ6U949 168 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 ZC3H7AQ8IWR0 971 aaKnown RBP13.41□□□□□ -0.26
SF3B1-204ENST00000414963 TMEM52Q8NDY8 209 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 GOT1L1Q8NHS2 421 aaPredicted RBP13.41□□□□□ -0.26
SF3B1-204ENST00000414963 OR5P2Q8WZ92 322 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 FKBP10Q96AY3 582 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 EXOSC8Q96B26 276 aaKnown RBP13.41□□□□□ -0.26
SF3B1-204ENST00000414963 ANKRD9Q96BM1 317 aaPredicted RBP13.41□□□□□ -0.26
SF3B1-204ENST00000414963 ROPN1LQ96C74 230 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 RCN3Q96D15 328 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 POLR1BQ9H9Y6 1135 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 ZNF282Q9UDV7 671 aaPredicted RBP13.41□□□□□ -0.26
SF3B1-204ENST00000414963 MMACHCQ9Y4U1 282 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 ZNF780BQ9Y6R6 833 aa13.41□□□□□ -0.26
SF3B1-204ENST00000414963 A0A096LPI6 279 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 A0A1W2PRB8 838 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 VSTM2BA6NLU5 285 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 B2RBV5 119 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 MRASO14807 208 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 AIM2O14862 343 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 ERN1O75460 977 aaKnown RBP13.4□□□□□ -0.26
SF3B1-204ENST00000414963 STK17BO94768 372 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 DLGAP3O95886 979 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 KRT16P08779 473 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 CSNK2A2P19784 350 aaPredicted RBP13.4□□□□□ -0.26
SF3B1-204ENST00000414963 MPIP34949 423 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 CPOXP36551 454 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 RASSF2P50749 326 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 XKP51811 444 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 MAP7Q14244 749 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 C3orf38Q5JPI3 329 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 LRIF1Q5T3J3 769 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 CPZQ66K79 652 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 C8orf82Q6P1X6 216 aaPredicted RBP13.4□□□□□ -0.26
SF3B1-204ENST00000414963 SLC2A7Q6PXP3 512 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 DLEU7Q6UYE1 221 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 SCUBE1Q8IWY4 988 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 PSMA8Q8TAA3 256 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 CIDECQ96AQ7 238 aaPredicted RBP13.4□□□□□ -0.26
SF3B1-204ENST00000414963 KLHL29Q96CT2 875 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 SLC7A6OSQ96CW6 309 aaPredicted RBP13.4□□□□□ -0.26
SF3B1-204ENST00000414963 CNRIP1Q96F85 164 aaPredicted RBP13.4□□□□□ -0.26
SF3B1-204ENST00000414963 ZBED6CLQ96FA7 236 aaPredicted RBP13.4□□□□□ -0.26
SF3B1-204ENST00000414963 AMDHD1Q96NU7 426 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 PHF12Q96QT6 1004 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 NPAS2Q99743 824 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 SLAMF7Q9NQ25 335 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 PRTFDC1Q9NRG1 225 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 GIMAP4Q9NUV9 329 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 GID8Q9NWU2 228 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 C5AR2Q9P296 337 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 ERVK-11Q9UQG0 969 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 PCDHGA7Q9Y5G6 932 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 CLDN16Q9Y5I7 305 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 SCN3AQ9NY46 2000 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 KNTC1P50748 2209 aa13.4□□□□□ -0.26
SF3B1-204ENST00000414963 FAM149AA5PLN7 773 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 SYNDIG1LA6NDD5 238 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 FGF17O60258 216 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 TNFSF15O95150 251 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 CYC1P08574 325 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 IFI6P09912 130 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 ZCCHC18P0CG32 403 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 SLC35E2P0CK97 266 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 PORP16435 677 aaPredicted RBP13.39□□□□□ -0.27
SF3B1-204ENST00000414963 HOXB9P17482 250 aaPredicted RBP13.39□□□□□ -0.27
SF3B1-204ENST00000414963 PTPN6P29350 595 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 CPA2P48052 419 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 FOLH1Q04609 750 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 SPRED3Q2MJR0 410 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 TRMT5Q32P41 509 aaKnown RBP13.39□□□□□ -0.27
SF3B1-204ENST00000414963 MRPL14Q6P1L8 145 aaKnown RBP13.39□□□□□ -0.27
SF3B1-204ENST00000414963 QSOX2Q6ZRP7 698 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 MIEF2Q96C03 454 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 SLC46A1Q96NT5 459 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 BBS4Q96RK4 519 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 HOPXQ9BPY8 73 aaPredicted RBP13.39□□□□□ -0.27
SF3B1-204ENST00000414963 GPATCH1Q9BRR8 931 aaKnown RBP13.39□□□□□ -0.27
SF3B1-204ENST00000414963 INPP5KQ9BT40 448 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 YIPF2Q9BWQ6 316 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 FAM117AQ9C073 453 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 PAIP1Q9H074 479 aaKnown RBP13.39□□□□□ -0.27
SF3B1-204ENST00000414963 WDR54Q9H977 334 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 C14orf105Q9NVL8 296 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 NDE1Q9NXR1 346 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 TAS2R1Q9NYW7 299 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 IFT80Q9P2H3 777 aaPredicted RBP13.39□□□□□ -0.27
SF3B1-204ENST00000414963 ENTPD4Q9Y227 616 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 GMEB1Q9Y692 573 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 SEC16AO15027 2179 aa13.39□□□□□ -0.27
SF3B1-204ENST00000414963 PIEZO1Q92508 2521 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms