RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 GIMAP4Q9NUV9 329 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 P2RX2Q9UBL9 471 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 PCDHGA4Q9Y5G9 962 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 SNX8Q9Y5X2 465 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 LYVE1Q9Y5Y7 322 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 ENPP4Q9Y6X5 453 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 PRR23AA6NEV1 266 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 ANTXRLA6NF34 631 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 TMEM229AB2RXF0 380 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 SLC31A1O15431 190 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 SH3BP5O60239 455 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 LCMT2O60294 686 aaKnown RBP12.88□□□□□ -0.35
LIMS1-205ENST00000410093 ANGPTL1O95841 491 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 ETS2P15036 469 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 XCR1P46094 333 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 CCT3P49368 545 aaKnown RBP12.88□□□□□ -0.35
LIMS1-205ENST00000410093 RGS1Q08116 209 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 PMS2P3Q13401 168 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 LRRC32Q14392 662 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 MRM1Q6IN84 353 aaKnown RBP12.88□□□□□ -0.35
LIMS1-205ENST00000410093 ABHD17CQ6PCB6 329 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 DHRS4L2Q6PKH6 230 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 KRT73Q86Y46 540 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 SPARTQ8N0X7 666 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 PARP8Q8N3A8 854 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 LINC00471Q8N535 108 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 OR56A1Q8NGH5 318 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 OR4C15Q8NGM1 316 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 NT5CQ8TCD5 201 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 LCN9Q8WX39 176 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 NR4A3Q92570 626 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 TMIGD2Q96BF3 282 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 DPH7Q9BTV6 452 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 DUSP21Q9H596 190 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 KLF15Q9UIH9 416 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 MMP17Q9ULZ9 603 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 ENTPD2Q9Y5L3 495 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 OR5K4A6NMS3 321 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 MAN2B1O00754 1011 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 LATO43561 262 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 TMPRSS11DO60235 418 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 OXSR1O95747 527 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-205ENST00000410093 IGLV3-19P01714 112 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 CHRM5P08912 532 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-205ENST00000410093 TFPTP0C1Z6 253 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 ZNF10P21506 573 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-205ENST00000410093 AQP1P29972 269 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 BCL6P41182 706 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 RABIFP47224 123 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 KHKP50053 298 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 NHLH1Q02575 133 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 RAPSNQ13702 412 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 MEP1AQ16819 746 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 NDUFAF5Q5TEU4 345 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 ENPP7Q6UWV6 458 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 OR10Q1Q8NGQ4 319 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 MIPOL1Q8TD10 442 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 PROX1Q92786 737 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 GAL3ST3Q96A11 431 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 BBS4Q96RK4 519 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 MYOCQ99972 504 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 SORBS1Q9BX66 1292 aaKnown RBP12.87□□□□□ -0.35
LIMS1-205ENST00000410093 BTBD2Q9BX70 525 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 GPN2Q9H9Y4 310 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-205ENST00000410093 SLC24A3Q9HC58 644 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 BCL2L10Q9HD36 194 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 SLC6A20Q9NP91 592 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 PRDM8Q9NQV8 689 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 PRDM7Q9NQW5 492 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 SIRT3Q9NTG7 399 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-205ENST00000410093 ENTPD4Q9Y227 616 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 KLK4Q9Y5K2 254 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 DGKBQ9Y6T7 804 aa12.87□□□□□ -0.35
LIMS1-205ENST00000410093 PLXND1Q9Y4D7 1925 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 ZDBF2Q9HCK1 2354 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 RTCAO00442 366 aaKnown RBP12.86□□□□□ -0.35
LIMS1-205ENST00000410093 TNFSF14O43557 240 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 GALR2O43603 387 aaPredicted RBP12.86□□□□□ -0.35
LIMS1-205ENST00000410093 MPZL2O60487 215 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 C1QCP02747 245 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 F3P13726 295 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 ATP5A1P25705 553 aaKnown RBP12.86□□□□□ -0.35
LIMS1-205ENST00000410093 MAT2AP31153 395 aaKnown RBP12.86□□□□□ -0.35
LIMS1-205ENST00000410093 MPIP34949 423 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 CLK3P49761 638 aaKnown RBP12.86□□□□□ -0.35
LIMS1-205ENST00000410093 CCR5P51681 352 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 PPP2CBP62714 309 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 PPP2CAP67775 309 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 PRR5P85299 388 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 SPIBQ01892 262 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 SLAMF1Q13291 335 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 CEBPEQ15744 281 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 CTU2Q2VPK5 515 aaKnown RBP12.86□□□□□ -0.35
LIMS1-205ENST00000410093 MANEAQ5SRI9 462 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 ZNF605Q86T29 641 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 TMEM105Q8N8V8 129 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 ACOT4Q8N9L9 421 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 PRSS33Q8NF86 280 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 OR10G2Q8NGC3 310 aa12.86□□□□□ -0.35
LIMS1-205ENST00000410093 OR5AK3PQ8NH89 298 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms