RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PUM1Q14671 1186 aaKnown RBP eCLIP12.72□□□□□ -0.37
VPS54-203ENST00000409558 NDUFAF5Q5TEU4 345 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 FAM71E1Q6IPT2 247 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 KIAA1211LQ6NV74 962 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 SIMC1Q8NDZ2 872 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 DNAJB8Q8NHS0 232 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 TP53INP1Q96A56 240 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 CEP19Q96LK0 163 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 PLA2G2FQ9BZM2 168 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 OR51I1Q9H343 314 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 MVB12BQ9H7P6 319 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 BRF2Q9HAW0 419 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 SAGE1Q9NXZ1 904 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 SPHK1Q9NYA1 384 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 BTNL2Q9UIR0 455 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 HEATR5BQ9P2D3 2071 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 TMEM229AB2RXF0 380 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 EIF3FO00303 357 aaPredicted RBP12.72□□□□□ -0.37
VPS54-203ENST00000409558 ATP6V1G1O75348 118 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 CERS1P27544 350 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 UBE3AQ05086 875 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 MICAQ29983 383 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 CDKL4Q5MAI5 379 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 PNCKQ6P2M8 343 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 NEK10Q6ZWH5 1172 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 DCUN1D3Q8IWE4 304 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 SFTPA2Q8IWL1 248 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 OR8H2Q8N162 312 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 LINC01555Q8NAE3 123 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 KCT2Q8NC54 265 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 OR2L2Q8NH16 312 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 ACER3Q9NUN7 267 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 TMEM9Q9P0T7 183 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 ENTPD6O75354 484 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 CHMP24386 653 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 GJA4P35212 333 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 DCDC1P59894 354 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 VEZF1Q14119 521 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 LTB4RQ15722 352 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 TAB1Q15750 504 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 REM2Q8IYK8 340 aaPredicted RBP12.71□□□□□ -0.37
VPS54-203ENST00000409558 OR4D11Q8NGI4 311 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 TSACCQ96A04 125 aaPredicted RBP12.71□□□□□ -0.37
VPS54-203ENST00000409558 COQ8BQ96D53 544 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 ITPAQ9BY32 194 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 RBCK1Q9BYM8 510 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 MKRN2Q9H000 416 aaKnown RBP12.71□□□□□ -0.37
VPS54-203ENST00000409558 ERVK13-1Q9NX77 482 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 AHSPQ9NZD4 102 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 CDH7Q9ULB5 785 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 KCNE3Q9Y6H6 103 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 ANKRD33BA6NCL7 494 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 CPSF4LA6NMK7 179 aaKnown RBP12.71□□□□□ -0.37
VPS54-203ENST00000409558 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.71□□□□□ -0.37
VPS54-203ENST00000409558 KPNA4O00629 521 aaPredicted RBP12.71□□□□□ -0.37
VPS54-203ENST00000409558 TNFRSF21O75509 655 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 KRT75O95678 551 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 ITGAMP11215 1152 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 GRK3P35626 688 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 CDC42P60953 191 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 PROX2Q3B8N5 592 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 REEP3Q6NUK4 255 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 OXR1Q8N573 874 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 STARD8Q92502 1023 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 TM4SF18Q96CE8 201 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 DOK1Q99704 481 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 PIP5K1AQ99755 562 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 BHLHE41Q9C0J9 482 aaPredicted RBP12.71□□□□□ -0.37
VPS54-203ENST00000409558 DUSP21Q9H596 190 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 C6orf106Q9H6K1 298 aaPredicted RBP12.71□□□□□ -0.37
VPS54-203ENST00000409558 TMEM45AQ9NWC5 275 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 ZNF226Q9NYT6 803 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 CFAP54Q96N23 3096 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 TRIM64A6NGJ6 449 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 PRMT3O60678 531 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 UGDHO60701 494 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 B4GALT2O60909 372 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 LILRB5O75023 590 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 ADRA2AP08913 450 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 CCR8P51685 355 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 SLC16A1P53985 500 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 GRSF1Q12849 480 aaKnown RBP eCLIP12.71□□□□□ -0.37
VPS54-203ENST00000409558 DCST1Q5T197 706 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 SPATC1Q76KD6 591 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 IQCHQ86VS3 1027 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 ANKRD13BQ86YJ7 626 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 GHDCQ8N2G8 530 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 METTL4Q8N3J2 472 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 TEFMQ96QE5 360 aaKnown RBP12.71□□□□□ -0.37
VPS54-203ENST00000409558 POLR2J3Q9H1A7 115 aaKnown RBP12.71□□□□□ -0.37
VPS54-203ENST00000409558 OR52A5Q9H2C5 316 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 SNTG1Q9NSN8 517 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 FAIMQ9NVQ4 179 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 CNIH4Q9P003 139 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 KLHL42Q9P2K6 505 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 SLC13A4Q9UKG4 626 aa12.71□□□□□ -0.37
VPS54-203ENST00000409558 A0A1W2PQU0 124 aa12.71□□□□□ -0.38
VPS54-203ENST00000409558 CTDSP2O14595 271 aa12.71□□□□□ -0.38
VPS54-203ENST00000409558 LINC01565O15544 149 aa12.71□□□□□ -0.38
VPS54-203ENST00000409558 RB1P06400 928 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms