RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 PRKYO43930 277 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 GBAP04062 536 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 HAPLN1P10915 354 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 GSTM2P28161 218 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 SGCDQ92629 289 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 RAB8BQ92930 207 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 RAD9AQ99638 391 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 BCL7BQ9BQE9 202 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 ACTR6Q9GZN1 396 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 SMOXQ9NWM0 555 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 FAM118AQ9NWS6 357 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 B4GALT6Q9UBX8 382 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 MRPS17Q9Y2R5 130 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 E7EQ34 232 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 ADH5P11766 374 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 BCKDHAP12694 445 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 MYF6P23409 242 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 UQCRC1P31930 480 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 RAB8AP61006 207 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 ACTC1P68032 377 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 ACTA1P68133 377 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 NPRL3Q12980 569 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 ARSKQ6UWY0 536 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 CCBE1Q6UXH8 406 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 ANKRD13BQ86YJ7 626 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 UMODL1-AS1Q8N2C9 162 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 POGLUT1Q8NBL1 392 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 RPLP0P6Q8NHW5 317 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 NSUN5Q96P11 429 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC2A13Q96QE2 648 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 PBDC1Q9BVG4 233 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 ACTL8Q9H568 366 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 GLTPD2A6NH11 291 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 AGAP5A6NIR3 686 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 INPPL1O15357 1258 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 SNNO75324 88 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 MPC1LP0DKB6 136 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 ALPPL2P10696 532 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 CHRNB1P11230 501 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 UGT2B10P36537 528 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 GLP1RP43220 463 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 IRF5Q13568 498 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 SPHARQ15513 63 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 NKAPLQ5M9Q1 402 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 LIPKQ5VXJ0 399 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 ZNF783Q6ZMS7 281 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 FANK1Q8TC84 345 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 DEDD2Q8WXF8 326 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 MKRN2Q9H000 416 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 TMEM185BQ9H7F4 350 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 A0A1B0GVI7 797 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 SOBPA7XYQ1 873 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 SULT1C2O00338 296 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC34A2O95436 690 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 S1PR4O95977 384 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 ZDHHC11BP0C7U3 371 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 TIA1P31483 386 aaKnown RBP eCLIP9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 GALK2Q01415 458 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 NIPAL4Q0D2K0 466 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 NFATC2Q13469 925 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 RPL13AP3Q6NVV1 102 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 CMTM8Q8IZV2 173 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 FAM86B1Q8N7N1 296 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 PLA2G15Q8NCC3 412 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 LRRC15Q8TF66 581 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 KCNN1Q92952 543 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 MALSU1Q96EH3 234 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 MRGPRX2Q96LB1 330 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 FAIMQ9NVQ4 179 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 LAMP5Q9UJQ1 280 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 BORCS7-ASMTA0A0B4J1R7 106 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 ZNF821O75541 412 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 ITGA5P08648 1049 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 PET100P0DJ07 73 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 NAT1P18440 290 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 AFF3P51826 1226 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 GALEQ14376 348 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 EXOC3L2Q2M3D2 409 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC35F1Q5T1Q4 408 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 Q8N402 240 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 CYB5D2Q8WUJ1 264 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 NSMAFQ92636 917 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 C11orf84Q9BUA3 381 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 CCDC32Q9BV29 185 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 FUNDC2Q9BWH2 189 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 BEX2Q9BXY8 128 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 TGIF2Q9GZN2 237 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 UNKLQ9H9P5 680 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 SEC61A2Q9H9S3 476 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 BEX1Q9HBH7 125 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 POLE4Q9NR33 117 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 GRHPRQ9UBQ7 328 aa9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 CFAP20Q9Y6A4 193 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC1A7O00341 560 aa9.84□□□□□ -0.83
LIMCH1-203ENST00000396595 KIAA0513O60268 411 aa9.84□□□□□ -0.83
LIMCH1-203ENST00000396595 GP1BBP13224 206 aa9.84□□□□□ -0.83
LIMCH1-203ENST00000396595 DNASE1P24855 282 aa9.84□□□□□ -0.83
LIMCH1-203ENST00000396595 CTSOP43234 321 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-203ENST00000396595 STT3AP46977 705 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms