RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 MYBPC1Q00872 1141 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 DDX39BQ13838 428 aaKnown RBP9.66□□□□□ -0.86
VPS53-202ENST00000389040 GRM7Q14831 915 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 HIST2H2ACQ16777 129 aaPredicted RBP9.66□□□□□ -0.86
VPS53-202ENST00000389040 TBC1D25Q3MII6 688 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 GTDC1Q4AE62 458 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 GARNL3Q5VVW2 1013 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 FOXB2Q5VYV0 432 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 HIST2H2AA3Q6FI13 130 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 NIPAL1Q6NVV3 410 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 SLCO4C1Q6ZQN7 724 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 TRIM73Q86UV7 250 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 CARM1Q86X55 608 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 TMEM132CQ8N3T6 1108 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 NEIL2Q969S2 332 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 METTL2AQ96IZ6 378 aaKnown RBP9.66□□□□□ -0.86
VPS53-202ENST00000389040 PRAP1Q96NZ9 151 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 OR2A5Q96R48 311 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 SEPHS2Q99611 448 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 CHID1Q9BWS9 393 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 GORASP2Q9H8Y8 452 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 FAM60AQ9NP50 221 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 ASCL3Q9NQ33 180 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 SLC6A13Q9NSD5 602 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 OAZ3Q9UMX2 235 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 RUVBL1Q9Y265 456 aaKnown RBP9.66□□□□□ -0.86
VPS53-202ENST00000389040 TSC22D4Q9Y3Q8 395 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 TMEM184BQ9Y519 407 aaPredicted RBP9.66□□□□□ -0.86
VPS53-202ENST00000389040 PCDHB14Q9Y5E9 798 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 PCDHGA11Q9Y5H2 935 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 SPEGQ15772 3267 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 A0A1W2PNU3 283 aaPredicted RBP9.66□□□□□ -0.86
VPS53-202ENST00000389040 MED19A0JLT2 244 aaPredicted RBP9.66□□□□□ -0.86
VPS53-202ENST00000389040 ELOVL7A1L3X0 281 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 PDLIM1O00151 329 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 ZSCAN9O15535 394 aaPredicted RBP9.66□□□□□ -0.86
VPS53-202ENST00000389040 OR2B3O76000 313 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 RASAL1O95294 804 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 LDLRP01130 860 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 CD63P08962 238 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 SMIM18P0DKX4 95 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 PVRP15151 417 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 HOXB9P17482 250 aaPredicted RBP9.66□□□□□ -0.86
VPS53-202ENST00000389040 KIR3DL1P43629 444 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 HNRNPFP52597 415 aaKnown RBP9.66□□□□□ -0.86
VPS53-202ENST00000389040 ACSM2AQ08AH3 577 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 DPY19L1Q2PZI1 675 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 NHSL2Q5HYW2 709 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 ACSM2BQ68CK6 577 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 ADCK2Q7Z695 626 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 GPR180Q86V85 440 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 ANKRD46Q86W74 232 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 FIG4Q92562 907 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 FGF11Q92914 225 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 GFM2Q969S9 779 aaKnown RBP9.66□□□□□ -0.86
VPS53-202ENST00000389040 EGLN2Q96KS0 407 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 RNF145Q96MT1 663 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 C17orf62Q9BQA9 187 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 CPPED1Q9BRF8 314 aaPredicted RBP9.66□□□□□ -0.86
VPS53-202ENST00000389040 CENPKQ9BS16 269 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 INPP5KQ9BT40 448 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 CCDC86Q9H6F5 360 aaKnown RBP9.66□□□□□ -0.86
VPS53-202ENST00000389040 ZNF696Q9H7X3 374 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 KAT8Q9H7Z6 458 aaKnown RBP9.66□□□□□ -0.86
VPS53-202ENST00000389040 KNTC1P50748 2209 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 UNC13CQ8NB66 2214 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 RNF103-CHMP3A0A140T963 221 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 MAGEB17A8MXT2 336 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 FAM220BPB1ANY3 271 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 TMEM150CB9EJG8 249 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 C9orf172C9J069 976 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 H3BMH7 237 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 STMND1H3BQB6 276 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 ACOX3O15254 700 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 BRINP1O60477 761 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 CTSVO60911 334 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 CPNE3O75131 537 aaKnown RBP9.65□□□□□ -0.86
VPS53-202ENST00000389040 MYO1DO94832 1006 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 SCELO95171 688 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 MT-ND1P03886 318 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 GSNP06396 782 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 RAP2AP10114 183 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 PCNAP12004 261 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 ITIH1P19827 911 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 PAX7P23759 505 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 PTPN6P29350 595 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 MAPK10P53779 464 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 C21orf58P58505 322 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 SKP1P63208 163 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 SRSF11Q05519 484 aaKnown RBP9.65□□□□□ -0.86
VPS53-202ENST00000389040 LIN52Q52LA3 116 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 FAM98BQ52LJ0 330 aaKnown RBP9.65□□□□□ -0.86
VPS53-202ENST00000389040 ADNP2Q6IQ32 1131 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 RHBDD2Q6NTF9 364 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 TMIGD1Q6UXZ0 262 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 TMPRSS11BQ86T26 416 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 CALHM3Q86XJ0 350 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 MICU2Q8IYU8 434 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 MFSD9Q8NBP5 474 aa9.65□□□□□ -0.86
VPS53-202ENST00000389040 CAMKVQ8NCB2 501 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms