RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 APOBEC4Q8WW27 367 aaKnown RBP20.13■□□□□ 0.81
UPF3A-202ENST00000375299 SLC22A12Q96S37 553 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 PRRG3Q9BZD7 231 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 FAM83DQ9H4H8 585 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 GIMAP4Q9NUV9 329 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 ELAVL4P26378 380 aaKnown RBP20.13■□□□□ 0.81
UPF3A-202ENST00000375299 IMPA1P29218 277 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 IRS1P35568 1242 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 BDKRB1P46663 353 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 SNRPD1P62314 119 aaKnown RBP20.13■□□□□ 0.81
UPF3A-202ENST00000375299 GPNMBQ14956 572 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 HEPACAMQ14CZ8 416 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 LYPD8Q6UX82 237 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 TMPRSS11BQ86T26 416 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 PLCZ1Q86YW0 608 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 OR56A3Q8NH54 315 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 ANGPTL6Q8NI99 470 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 FOXJ1Q92949 421 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 HCN2Q9UL51 889 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 OR10H3O60404 316 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 TRIM3O75382 744 aaPredicted RBP20.12■□□□□ 0.81
UPF3A-202ENST00000375299 CCNYL3P0C7X3 344 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 SSTR4P31391 388 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 GPR19Q15760 415 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 LRRC73Q5JTD7 316 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 DCST1Q5T197 706 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 PLET1Q6UQ28 207 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 PAMR1Q6UXH9 720 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 CEACAM20Q6UY09 585 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 Q6ZNB5 142 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 ARMCX6Q7L4S7 300 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 C16orf78Q8WTQ4 265 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 B4GALT6Q9UBX8 382 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 CLEC4EQ9ULY5 219 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 DIMT1Q9UNQ2 313 aaKnown RBP20.12■□□□□ 0.81
UPF3A-202ENST00000375299 TMEM202A6NGA9 273 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 PDE9AO76083 593 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 MAP2K3P46734 347 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 GZMKP49863 264 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 PNLIPRP1P54315 467 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 WDR5P61964 334 aaKnown RBP20.12■□□□□ 0.81
UPF3A-202ENST00000375299 REEP3Q6NUK4 255 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 SLCO4C1Q6ZQN7 724 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 NEIL2Q969S2 332 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 TMEM203Q969S6 136 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 KCTD7Q96MP8 289 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 MED18Q9BUE0 208 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 ANKRA2Q9H9E1 313 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 LRFN2Q9ULH4 789 aa20.12■□□□□ 0.81
UPF3A-202ENST00000375299 A0A1W2PRB8 838 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 FAAHO00519 579 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 ARHGEF9O43307 516 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 RAB36O95755 333 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 CRYZL1O95825 349 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 SLC16A8O95907 504 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 CATP04040 527 aaKnown RBP20.11■□□□□ 0.81
UPF3A-202ENST00000375299 SELPP16109 830 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 ALAS2P22557 587 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 TATDN3Q17R31 274 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 PRSS53Q2L4Q9 553 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 ZNF628Q5EBL2 1059 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 RPS26P11Q5JNZ5 115 aaPredicted RBP20.11■□□□□ 0.81
UPF3A-202ENST00000375299 SIGIRRQ6IA17 410 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 FAM71E1Q6IPT2 247 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 SLC43A3Q8NBI5 491 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 ATP6V1C2Q8NEY4 427 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 NLGN4YQ8NFZ3 816 aaPredicted RBP20.11■□□□□ 0.81
UPF3A-202ENST00000375299 OR52I1Q8NGK6 324 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 WDR48Q8TAF3 677 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 AP3S1Q92572 193 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 TRMT2BQ96GJ1 504 aaKnown RBP20.11■□□□□ 0.81
UPF3A-202ENST00000375299 MYNNQ9NPC7 610 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 NDRG2Q9UN36 371 aaKnown RBP20.11■□□□□ 0.81
UPF3A-202ENST00000375299 GPSM3Q9Y4H4 160 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 NINQ8N4C6 2090 aa20.11■□□□□ 0.81
UPF3A-202ENST00000375299 A0A0X1KG70 313 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 A0A1W2PQ45 241 aaPredicted RBP20.1■□□□□ 0.81
UPF3A-202ENST00000375299 A0A1W2PQY0 241 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 OR2AG2A6NM03 316 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 HCN1O60741 890 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 MYCP01106 439 aaPredicted RBP20.1■□□□□ 0.81
UPF3A-202ENST00000375299 CD70P32970 193 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 SDC2P34741 201 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 STK19P49842 368 aaPredicted RBP20.1■□□□□ 0.81
UPF3A-202ENST00000375299 TNK1Q13470 666 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 SYTL3Q4VX76 610 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 ZC3HAV1LQ96H79 300 aaKnown RBP20.1■□□□□ 0.81
UPF3A-202ENST00000375299 POLR2J3Q9H1A7 115 aaKnown RBP20.1■□□□□ 0.81
UPF3A-202ENST00000375299 NIPAL2Q9H841 368 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 SPIN1Q9Y657 262 aaPredicted RBP20.1■□□□□ 0.81
UPF3A-202ENST00000375299 ALG5Q9Y673 324 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 KCNE2Q9Y6J6 123 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 SAP18O00422 153 aaKnown RBP20.1■□□□□ 0.81
UPF3A-202ENST00000375299 OPRD1P41143 372 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 MADCAM1Q13477 382 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 FLYWCH1Q4VC44 716 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 SMUG1Q53HV7 270 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 CEP78Q5JTW2 689 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 ATAT1Q5SQI0 421 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 PGBD2Q6P3X8 592 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms