RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 MAPK12P53778 367 aa11.55□□□□□ -0.56
CLIP3-201ENST00000360535 KCNC3Q14003 757 aa11.55□□□□□ -0.56
CLIP3-201ENST00000360535 ZNF630Q2M218 657 aaPredicted RBP11.55□□□□□ -0.56
CLIP3-201ENST00000360535 FAM20CQ8IXL6 584 aa11.55□□□□□ -0.56
CLIP3-201ENST00000360535 TRAM1L1Q8N609 369 aa11.55□□□□□ -0.56
CLIP3-201ENST00000360535 SLC43A3Q8NBI5 491 aa11.55□□□□□ -0.56
CLIP3-201ENST00000360535 SLC5A11Q8WWX8 675 aa11.55□□□□□ -0.56
CLIP3-201ENST00000360535 C1GALT1C1Q96EU7 318 aa11.55□□□□□ -0.56
CLIP3-201ENST00000360535 MVB12BQ9H7P6 319 aa11.55□□□□□ -0.56
CLIP3-201ENST00000360535 SLAMF7Q9NQ25 335 aa11.55□□□□□ -0.56
CLIP3-201ENST00000360535 ASAH2Q9NR71 780 aa11.55□□□□□ -0.56
CLIP3-201ENST00000360535 CCDC59Q9P031 241 aaKnown RBP11.55□□□□□ -0.56
CLIP3-201ENST00000360535 UGT2A1Q9Y4X1 527 aa11.55□□□□□ -0.56
CLIP3-201ENST00000360535 N6AMT1Q9Y5N5 214 aa11.55□□□□□ -0.56
CLIP3-201ENST00000360535 SLC5A10A0PJK1 596 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 SYNDIG1LA6NDD5 238 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 ANHXE9PGG2 379 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 PPM1DO15297 605 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 LZTS3O60299 673 aaPredicted RBP11.54□□□□□ -0.56
CLIP3-201ENST00000360535 SLITRK5O94991 958 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 OLFM2O95897 454 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 HSD3B1P14060 373 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 HSD3B2P26439 372 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 HNRNPFP52597 415 aaKnown RBP11.54□□□□□ -0.56
CLIP3-201ENST00000360535 MLLT1Q03111 559 aaPredicted RBP11.54□□□□□ -0.56
CLIP3-201ENST00000360535 TAP2Q03519 686 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 FCHO2Q0JRZ9 810 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 HNRNPA0Q13151 305 aaKnown RBP11.54□□□□□ -0.56
CLIP3-201ENST00000360535 SYPL1Q16563 259 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 ATAD3CQ5T2N8 411 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 OR2G6Q5TZ20 316 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 AGAP6Q5VW22 663 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 ZNF517Q6ZMY9 492 aaPredicted RBP11.54□□□□□ -0.56
CLIP3-201ENST00000360535 ADIPOR2Q86V24 386 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 ATCAYQ86WG3 371 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 CPXM2Q8N436 756 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 OR5AR1Q8NGP9 310 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 KLHL6Q8WZ60 621 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 DIRAS2Q96HU8 199 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 AGAP4Q96P64 663 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 MAPKAP1Q9BPZ7 522 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 RC3H2Q9HBD1 1191 aaKnown RBP11.54□□□□□ -0.56
CLIP3-201ENST00000360535 CCDC177Q9NQR7 707 aaPredicted RBP11.54□□□□□ -0.56
CLIP3-201ENST00000360535 CRNNQ9UBG3 495 aaPredicted RBP11.54□□□□□ -0.56
CLIP3-201ENST00000360535 GULP1Q9UBP9 304 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 TAC3Q9UHF0 121 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 SPIN1Q9Y657 262 aaPredicted RBP11.54□□□□□ -0.56
CLIP3-201ENST00000360535 SCN3AQ9NY46 2000 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 ZAR1LA6NP61 321 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 H3BQ06 376 aaPredicted RBP11.54□□□□□ -0.56
CLIP3-201ENST00000360535 MMP20O60882 483 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 PRKRAO75569 313 aaKnown RBP11.54□□□□□ -0.56
CLIP3-201ENST00000360535 NTN1O95631 604 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 OR12D1P0DN82 309 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 ARAFP10398 606 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 HOXD10P28358 340 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 GSTM5P46439 218 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 DGKGP49619 791 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 ZFP69Q49AA0 526 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 CLEC12AQ5QGZ9 265 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 LIPIQ6XZB0 460 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 DTX3Q8N9I9 347 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 IRF7Q92985 503 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 SPATA9Q9BWV2 254 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 PLSCR3Q9NRY6 295 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 FKBP14Q9NWM8 211 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 ATP6V1HQ9UI12 483 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 TBC1D24Q9ULP9 559 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 PPIL1Q9Y3C6 166 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 KLK4Q9Y5K2 254 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 A0A1W2PQ09 198 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 POP7O75817 140 aaKnown RBP11.54□□□□□ -0.56
CLIP3-201ENST00000360535 CH25HO95992 272 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 ZNF30P17039 623 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 CD83Q01151 205 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 EIF4HQ15056 248 aaKnown RBP11.54□□□□□ -0.56
CLIP3-201ENST00000360535 TBRG1Q3YBR2 411 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 ATAT1Q5SQI0 421 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 MPP7Q5T2T1 576 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 FAM71E1Q6IPT2 247 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 CPA6Q8N4T0 437 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 SYT14Q8NB59 555 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 OR4D11Q8NGI4 311 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 OR9A1PQ8NGU1 263 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 PIK3R3Q92569 461 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 YME1L1Q96TA2 773 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 QRSL1Q9H0R6 528 aaKnown RBP11.54□□□□□ -0.56
CLIP3-201ENST00000360535 CHD7Q9P2D1 2997 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 TBC1D14Q9P2M4 693 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 FTSJ1Q9UET6 329 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 IL36AQ9UHA7 158 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 SSR3Q9UNL2 185 aa11.54□□□□□ -0.56
CLIP3-201ENST00000360535 NPIPB8E9PQR5 432 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 H7BY64 318 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 FRS3O43559 492 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 SEMA7AO75326 666 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 ERAL1O75616 437 aaKnown RBP11.53□□□□□ -0.56
CLIP3-201ENST00000360535 CXCL14O95715 111 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 H1F0P07305 194 aaKnown RBP11.53□□□□□ -0.56
CLIP3-201ENST00000360535 HBQ1P09105 142 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms