RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 ACTA2P62736 377 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 ACTG2P63267 376 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 RAB33AQ14088 237 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 TSC22D1Q15714 1073 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 CTC1Q2NKJ3 1217 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 PLEKHN1Q494U1 663 aaPredicted RBP11.26□□□□□ -0.61
COL9A1-202ENST00000357250 PSAPL1Q6NUJ1 521 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 FIP1L1Q6UN15 594 aaKnown RBP11.26□□□□□ -0.61
COL9A1-202ENST00000357250 C17orf99Q6UX52 265 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 OR52N2Q8NGI0 321 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 SCRN2Q96FV2 425 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 PHOX2BQ99453 314 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 MCCC2Q9HCC0 563 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 PRTFDC1Q9NRG1 225 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 NUDT15Q9NV35 164 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 KLRF1Q9NZS2 232 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 MYH4Q9Y623 1939 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 A0A1B0GVC2 190 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 ZBTB42B2RXF5 422 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 SCAMP2O15127 329 aaKnown RBP11.26□□□□□ -0.61
COL9A1-202ENST00000357250 RHOP08100 348 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 ETV3P41162 512 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 ZNF41P51814 821 aaPredicted RBP11.26□□□□□ -0.61
COL9A1-202ENST00000357250 TBPL1P62380 186 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 FLYWCH1Q4VC44 716 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 PRRT3Q5FWE3 981 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 MARCH8Q5T0T0 291 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 XKR5Q6UX68 686 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 CENPSQ8N2Z9 138 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 THEM6Q8WUY1 208 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 CHIAQ9BZP6 476 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 SFXN1Q9H9B4 322 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 C12orf4Q9NQ89 552 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 CLDND1Q9NY35 253 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 MARCH4Q9P2E8 410 aaPredicted RBP11.26□□□□□ -0.61
COL9A1-202ENST00000357250 ADAMTS6Q9UKP5 1117 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 HTR3EA5X5Y0 456 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 ZNF701M0R085 212 aaPredicted RBP11.26□□□□□ -0.61
COL9A1-202ENST00000357250 NUAK1O60285 661 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 ATP6V1G1O75348 118 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 CH25HO95992 272 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 S1PR1P21453 382 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 ABRAXAS2Q15018 415 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 GFOD2Q3B7J2 385 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 LRRC25Q8N386 305 aaPredicted RBP11.26□□□□□ -0.61
COL9A1-202ENST00000357250 MS4A15Q8N5U1 240 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 TMEM156Q8N614 296 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 KDM1BQ8NB78 822 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 DENND6BQ8NEG7 585 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 NUP43Q8NFH3 380 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 SCAMP4Q969E2 229 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 FAM118AQ9NWS6 357 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 ASB6Q9NWX5 421 aa11.26□□□□□ -0.61
COL9A1-202ENST00000357250 C14orf166Q9Y224 244 aaKnown RBP11.26□□□□□ -0.61
COL9A1-202ENST00000357250 MBLAC1A4D2B0 266 aaPredicted RBP11.25□□□□□ -0.61
COL9A1-202ENST00000357250 FAM221BA6H8Z2 402 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 UNC119BA6NIH7 251 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 B4GALT2O60909 372 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 RPP14O95059 124 aaKnown RBP11.25□□□□□ -0.61
COL9A1-202ENST00000357250 SLC6A9P48067 706 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 SPINT3P49223 89 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 GXYLT1Q4G148 440 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 GDPGP1Q6ZNW5 385 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 CHERPQ8IWX8 916 aaKnown RBP11.25□□□□□ -0.61
COL9A1-202ENST00000357250 SIX5Q8N196 739 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 OR6N1Q8NGY5 312 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 NSMAFQ92636 917 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 RAB8BQ92930 207 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 RFT1Q96AA3 541 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 MGLLQ99685 303 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 ORAI3Q9BRQ5 295 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 SYT11Q9BT88 431 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 RNF121Q9H920 327 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 PELI2Q9HAT8 420 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 PAK1IP1Q9NWT1 392 aaPredicted RBP11.25□□□□□ -0.61
COL9A1-202ENST00000357250 INMT-MINDY4F8WBC2 141 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 PEX12O00623 359 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 TP53I11O14683 189 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 RNH1P13489 461 aaKnown RBP11.25□□□□□ -0.61
COL9A1-202ENST00000357250 ETV4P43268 484 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 INHBCP55103 352 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 MADCAM1Q13477 382 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 CST9Q5W186 159 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 ARHGAP11AQ6P4F7 1023 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 FUBP1Q96AE4 644 aaKnown RBP11.25□□□□□ -0.61
COL9A1-202ENST00000357250 BMFQ96LC9 184 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 P2RY13Q9BPV8 354 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 POLDIP3Q9BY77 421 aaKnown RBP11.25□□□□□ -0.61
COL9A1-202ENST00000357250 MYNNQ9NPC7 610 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 HRASLS2Q9NWW9 162 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 MYH7BA7E2Y1 1941 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 ANKRD36CQ5JPF3 1778 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 ZNF878C9JN71 531 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 TMEM189-UBE2V1I3L0A0 370 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 PHYHO14832 338 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 SCGNO76038 276 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 GKP32189 559 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 SPHARQ15513 63 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 OCLNQ16625 522 aa11.25□□□□□ -0.61
COL9A1-202ENST00000357250 SLC36A3Q495N2 470 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms