RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PENKP01210 267 aaPredicted RBP12.12□□□□□ -0.47
SDC3-201ENST00000336798 HRGP04196 525 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 CD3GP09693 182 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 HAPLN1P10915 354 aaPredicted RBP12.12□□□□□ -0.47
SDC3-201ENST00000336798 IFNGR1P15260 489 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 GPR157Q5UAW9 335 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 ASPGQ86U10 573 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 LIX1LQ8IVB5 337 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 SPRYD4Q8WW59 207 aaPredicted RBP12.12□□□□□ -0.47
SDC3-201ENST00000336798 PEX13Q92968 403 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 NSUN5Q96P11 429 aaKnown RBP12.12□□□□□ -0.47
SDC3-201ENST00000336798 NEDD4LQ96PU5 975 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 ZNF442Q9H7R0 627 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 AP1M2Q9Y6Q5 423 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 IGLON5A6NGN9 336 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 RHOP08100 348 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 ANXA3P12429 323 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 LSSP48449 732 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 TRAM2Q15035 370 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 RNF111Q6ZNA4 994 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 CFAP77Q6ZQR2 320 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 LHFPL3Q86UP9 236 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 PROKR1Q8TCW9 393 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 LRRC46Q96FV0 321 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 TMEM185BQ9H7F4 350 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 EXTL2Q9UBQ6 330 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 SRRDQ9UH36 339 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 TP53I11O14683 189 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 PRKCAP17252 672 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 AMY2BP19961 511 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 MAPK3P27361 379 aaPredicted RBP12.12□□□□□ -0.47
SDC3-201ENST00000336798 CTHP32929 405 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 ZNF763Q0D2J5 394 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 NFE2L1Q14494 772 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 ZNF423Q2M1K9 1284 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 FCRLBQ6BAA4 426 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 ZFP41Q8N8Y5 198 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 GLIS1Q8NBF1 620 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 DENND1AQ8TEH3 1009 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 C16orf58Q96GQ5 468 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 SLC29A3Q9BZD2 475 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 DERL2Q9GZP9 239 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 ST6GALNAC4Q9H4F1 302 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 MKLN1Q9UL63 735 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 ST14Q9Y5Y6 855 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 LAMTOR5O43504 91 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 ZNF821O75541 412 aaPredicted RBP12.11□□□□□ -0.47
SDC3-201ENST00000336798 MAB21L1Q13394 359 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 KCNJ11Q14654 390 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 DEFB110Q30KQ9 67 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 ERN2Q76MJ5 926 aaKnown RBP12.11□□□□□ -0.47
SDC3-201ENST00000336798 ZNF584Q8IVC4 421 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 PEX11GQ96HA9 241 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 OR2M4Q96R27 311 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 PITX2Q99697 317 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 KCNK12Q9HB15 430 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 OR1A2Q9Y585 309 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 GGT3PA6NGU5 568 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 UNC119BA6NIH7 251 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 MPPED1O15442 326 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 EBLN1P0CF75 366 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 CELP19835 753 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 RPS3P23396 243 aaKnown RBP eCLIP12.11□□□□□ -0.47
SDC3-201ENST00000336798 OXTRP30559 389 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 ZNF45Q02386 682 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 GABRQQ9UN88 632 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 A0A1B0GVG6 124 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 H7C417 338 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 AKR1C4P17516 323 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 CD9P21926 228 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 RPS21P63220 83 aaKnown RBP12.11□□□□□ -0.47
SDC3-201ENST00000336798 REEP3Q6NUK4 255 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 TIGD4Q8IY51 512 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 SLC30A2Q9BRI3 323 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 CENPOQ9BU64 300 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 REEP4Q9H6H4 257 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 MRM3Q9HC36 420 aaKnown RBP12.11□□□□□ -0.47
SDC3-201ENST00000336798 IL20RAQ9UHF4 553 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 DCKP27707 260 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 SHMT2P34897 504 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 GPR4P46093 362 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 CRYZQ08257 329 aaKnown RBP12.11□□□□□ -0.47
SDC3-201ENST00000336798 LMAN2Q12907 356 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 GLT8D1Q68CQ7 371 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 SLC16A9Q7RTY1 509 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 TMPRSS12Q86WS5 348 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 TMEM151AQ8N4L1 468 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 SMG8Q8ND04 991 aaKnown RBP12.11□□□□□ -0.47
SDC3-201ENST00000336798 DPH2Q9BQC3 489 aaPredicted RBP12.11□□□□□ -0.47
SDC3-201ENST00000336798 PDE7BQ9NP56 450 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 NLE1Q9NVX2 485 aaPredicted RBP12.11□□□□□ -0.47
SDC3-201ENST00000336798 C14orf119Q9NWQ9 140 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 FAM159BA6NKW6 160 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 OR2B3O76000 313 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 UQCRC2P22695 453 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 GSTM2P28161 218 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 RAB4BP61018 213 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 ZNF678Q5SXM1 525 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 CEACAM19Q7Z692 300 aa12.11□□□□□ -0.47
SDC3-201ENST00000336798 NIPA2Q8N8Q9 360 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms