RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 METTL3Q86U44 580 aaKnown RBP12.8□□□□□ -0.36
SKA3-202ENST00000314759 NPAS4Q8IUM7 802 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 FAM109AQ8N4B1 249 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 SPERTQ8NA61 448 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 NLGN4YQ8NFZ3 816 aaPredicted RBP12.8□□□□□ -0.36
SKA3-202ENST00000314759 APOBEC4Q8WW27 367 aaKnown RBP12.8□□□□□ -0.36
SKA3-202ENST00000314759 SLC25A46Q96AG3 418 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 FRMD6Q96NE9 622 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 COQ7Q99807 217 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 UCK2Q9BZX2 261 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 ZNF334Q9HCZ1 680 aaPredicted RBP12.8□□□□□ -0.36
SKA3-202ENST00000314759 ANGPT4Q9Y264 503 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 A0A1W2PQ72 361 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 PLA2G10O15496 165 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 TSPAN6O43657 245 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 ADAP00813 363 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 CLEC2LP0C7M8 214 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 SOAT1P35610 550 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 OPRD1P41143 372 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 TAS2R50P59544 299 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 ZNF91Q05481 1191 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 TCTN1Q2MV58 587 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 TMEM201Q5SNT2 666 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 FAM180BQ6P0A1 224 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 C22orf39Q6P5X5 142 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 TRIM69Q86WT6 500 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 VWA5B2Q8N398 1253 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 CAMKK1Q8N5S9 505 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 FAM181AQ8N9Y4 354 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 FIBINQ8TAL6 211 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 C16orf78Q8WTQ4 265 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 SYT17Q9BSW7 474 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 MKRN2Q9H000 416 aaKnown RBP12.8□□□□□ -0.36
SKA3-202ENST00000314759 OR51B5Q9H339 312 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 RERGLQ9H628 205 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 RNF121Q9H920 327 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 STMN3Q9NZ72 180 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 NDOR1Q9UHB4 597 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 SSR3Q9UNL2 185 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 SH2B3Q9UQQ2 575 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 PRELID1Q9Y255 219 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 TET1Q8NFU7 2136 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 LAMA3Q16787 3333 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 EFEMP2O95967 443 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 CHRM5P08912 532 aaPredicted RBP12.79□□□□□ -0.36
SKA3-202ENST00000314759 MSL3P1P0C860 447 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.79□□□□□ -0.36
SKA3-202ENST00000314759 RPS26P11Q5JNZ5 115 aaPredicted RBP12.79□□□□□ -0.36
SKA3-202ENST00000314759 SLC35F1Q5T1Q4 408 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 HSD11B1LQ7Z5J1 315 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 CCDC28AQ8IWP9 274 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 KLHDC8AQ8IYD2 350 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 GPR65Q8IYL9 337 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 LMNTD1Q8N9Z9 388 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 PROKR2Q8NFJ6 384 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 CREB3L4Q8TEY5 395 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 ZIC5Q96T25 663 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 FAM83DQ9H4H8 585 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 KCNE2Q9Y6J6 123 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 DOCK6Q96HP0 2047 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 A0A1W2PQL4 384 aaPredicted RBP12.79□□□□□ -0.36
SKA3-202ENST00000314759 A0A1W2PRB8 838 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 HEPACAM2A8MVW5 462 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 H3BN98 237 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 PRKACBP22694 351 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 MLLT3P42568 568 aaPredicted RBP12.79□□□□□ -0.36
SKA3-202ENST00000314759 CTSCP53634 463 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 SYTL3Q4VX76 610 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 SAXO2Q658L1 398 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 FAM71E1Q6IPT2 247 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 Q6ZVL8 140 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 RNF180Q86T96 592 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 FAM20CQ8IXL6 584 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 MMP21Q8N119 569 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 CRIPAKQ8N1N5 446 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 CHST14Q8NCH0 376 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 TMEM203Q969S6 136 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 TMEM159Q96B96 161 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 DHRS9Q9BPW9 319 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 TSSK6Q9BXA6 273 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 TXNL4BQ9NX01 149 aaKnown RBP12.79□□□□□ -0.36
SKA3-202ENST00000314759 MAT2BQ9NZL9 334 aa12.79□□□□□ -0.36
SKA3-202ENST00000314759 PLEKHB1Q9UF11 243 aaPredicted RBP12.79□□□□□ -0.36
SKA3-202ENST00000314759 RPL36Q9Y3U8 105 aaKnown RBP12.79□□□□□ -0.36
SKA3-202ENST00000314759 FABP12A6NFH5 140 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 AP2A2O94973 939 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 CATP04040 527 aaKnown RBP12.78□□□□□ -0.36
SKA3-202ENST00000314759 UBL4AP11441 157 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 UQCRC1P31930 480 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 GPC1P35052 558 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 IL12RB1P42701 662 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 CCL23P55773 120 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 DSTNP60981 165 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 MLLT11Q13015 90 aaPredicted RBP12.78□□□□□ -0.36
SKA3-202ENST00000314759 HNRNPA0Q13151 305 aaKnown RBP12.78□□□□□ -0.36
SKA3-202ENST00000314759 BTBD16Q32M84 506 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 C12orf73Q69YU5 71 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 XKRXQ6PP77 449 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 CELF5Q8N6W0 485 aaKnown RBP12.78□□□□□ -0.36
SKA3-202ENST00000314759 TCEANCQ8N8B7 351 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms