RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 CMSS1Q9BQ75 279 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 ACSS3Q9H6R3 686 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 OBP2BQ9NPH6 170 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 OBP2AQ9NY56 170 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 COLEC10Q9Y6Z7 277 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 PMS2P1A4D2B8 440 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 DEGS1O15121 323 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 GLRA2P23416 452 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 AK4P27144 223 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 ELK4P28324 431 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 ACVR1BP36896 505 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 SELENOVP59797 346 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 POU6F1Q14863 301 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 XKR4Q5GH76 650 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 TMEM236Q5W0B7 351 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 SAMD7Q7Z3H4 446 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 KLBQ86Z14 1044 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 CASKIN2Q8WXE0 1202 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 EMID1Q96A84 441 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 MSLNLQ96KJ4 702 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 PIAS3Q9Y6X2 628 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 SDR42E2A6NKP2 422 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 hCG_2039718K7EN88 272 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 RFXANKO14593 260 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 PDE6DO43924 150 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 FBXO24O75426 580 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 ALDOBP05062 364 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 ACKR3P25106 362 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 COILP38432 576 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 CLCNKBP51801 687 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 P2RX3P56373 397 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 RHOAP61586 193 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 LIN52Q52LA3 116 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 MEX3BQ6ZN04 569 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 ASB13Q8WXK3 278 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 RPL10LQ96L21 214 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 YIPF4Q9BSR8 244 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 NIF3L1Q9GZT8 377 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 SAP130Q9H0E3 1048 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC32A1Q9H598 525 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 NT5MQ9NPB1 228 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 GJB4Q9NTQ9 266 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 ERVK13-1Q9NX77 482 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC17A7Q9P2U7 560 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 GHRLQ9UBU3 117 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC2A6Q9UGQ3 507 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 AMDHD2Q9Y303 409 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 TESMINQ9Y4I5 508 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 SALL1Q9NSC2 1324 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 PLA2R1Q13018 1463 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 ADCY10Q96PN6 1610 aa7.36□□□□□ -1.23
LIMCH1-201ENST00000313860 LRRC72A6NJI9 287 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 PAHP00439 452 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 F7P08709 466 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 HOXA13P31271 388 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 CDK5Q00535 292 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 NHLH1Q02575 133 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 NHLH2Q02577 135 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 POU3F1Q03052 451 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 TSGA10IPQ3SY00 556 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 UNC50Q53HI1 259 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 SFRP4Q6FHJ7 346 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 OGFOD3Q6PK18 319 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 MRPL52Q86TS9 123 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC30A7Q8NEW0 376 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 LPAR1Q92633 364 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 MRAP2Q96G30 205 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 ZC3HAV1LQ96H79 300 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC39A8Q9C0K1 460 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 OR51B5Q9H339 312 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 SEPSECSQ9HD40 501 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF629Q9UEG4 869 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC22A13Q9Y226 551 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 TCHHQ07283 1943 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 A0A1B0GVI7 797 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 ANTXRLA6NF34 631 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 OR4C46A6NHA9 309 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 ENPP3O14638 875 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 KIAA0513O60268 411 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF780AO75290 641 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 MMP7P09237 267 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 ITGAMP11215 1152 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 DRD4P21917 467 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 TNFSF9P41273 254 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 TMEM115Q12893 351 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 DACT2Q5SW24 774 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 FBXO31Q5XUX0 539 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 LCN10Q6JVE6 187 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 ARHGAP27Q6ZUM4 889 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 CDC20BQ86Y33 519 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 GPR152Q8TDT2 470 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 MUL1Q969V5 352 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 RBM4Q9BWF3 364 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 GSTO2Q9H4Y5 243 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 CISHQ9NSE2 258 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 RNF215Q9Y6U7 377 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 hCG_1807616A0A1W2PRN6 198 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 SH2D7A6NKC9 451 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 CSDE1O75534 798 aaKnown RBP7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms