RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 MRPL37Q9BZE1 423 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SCAND2PQ9GZW5 306 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 MTHFD2LQ9H903 347 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 EML4Q9HC35 981 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 FAM118AQ9NWS6 357 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 RAB21Q9UL25 225 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 KDM3AQ9Y4C1 1321 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM238C9JI98 176 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SLC16A3O15427 465 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SUSD5O60279 629 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 NME6O75414 186 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 KLF8O95600 359 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 F10P00742 488 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 RAF1P04049 648 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ANTXR2P58335 489 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OR2B8PP59922 312 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PITPNAQ00169 270 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SAMD4BQ5PRF9 694 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF790Q6PG37 636 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 LILRA6Q6PI73 481 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 MRPL52Q86TS9 123 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 IGFN1Q86VF2 1251 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ZDHHC21Q8IVQ6 265 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 DNAAF1Q8NEP3 725 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PROKR2Q8NFJ6 384 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 DCPSQ96C86 337 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OR8B4Q96RC9 309 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ST6GALNAC4Q9H4F1 302 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 KCNG2Q9UJ96 466 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 A3GALT2U3KPV4 340 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TANC2Q9HCD6 1990 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 H3BSA7 217 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 LEFTY2O00292 366 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 CDS2O95674 445 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 MYL2P10916 166 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TPSB2P20231 275 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 DSG3P32926 999 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 RAB25P57735 213 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 RPL23AP62750 156 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TPSAB1Q15661 275 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF628Q5EBL2 1059 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ABHD12BQ7Z5M8 362 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OR5B3Q8NH48 314 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ATXN2LQ8WWM7 1075 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 MOAP1Q96BY2 351 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 KLHL15Q96M94 604 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SERINC1Q9NRX5 453 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM161AQ9NX61 479 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 RNF150Q9ULK6 438 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ST3GAL5Q9UNP4 418 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PARD3Q8TEW0 1356 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 K7ERU9 68 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 LEFTY1O75610 366 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 AQP8O94778 261 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 VAMP5O95183 116 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 AKR1A1P14550 325 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 WNT5AP41221 380 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 MPEG1Q2M385 716 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OR52W1Q6IF63 320 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ABHD13Q7L211 337 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PROSER1Q86XN7 944 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ZBTB2Q8N680 514 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 CMASQ8NFW8 434 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OR4A16Q8NH70 328 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 BCL2L2Q92843 193 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 RNFT2Q96EX2 444 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 MAGT1Q9H0U3 335 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 C19orf44Q9H6X5 657 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 MED20Q9H944 212 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 DRG1Q9Y295 367 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM72A0PK05 275 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 RFPL4AA6NLU0 287 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 RFPL4AL1F8VTS6 287 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OR7A17O14581 309 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PIGRP01833 764 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ADRB2P07550 413 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 HOXB5P09067 269 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 UCHL3P15374 230 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ASIC1P78348 528 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 KLF10Q13118 480 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ENPP2Q13822 863 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 IDI1Q13907 227 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PKDCCQ504Y2 493 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 FAM98BQ52LJ0 330 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 CES5AQ6NT32 575 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ANKRD54Q6NXT1 300 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TRABD2AQ86V40 505 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PGAM4Q8N0Y7 254 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TP53I13Q8NBR0 393 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OR10K1Q8NGX5 313 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 RCN3Q96D15 328 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM80Q96HE8 168 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TASP1Q9H6P5 420 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TMBIM4Q9HC24 238 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PLLPQ9Y342 182 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TCRBV21S2A2A0A5A6 115 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 C17orf102A2RUQ5 167 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 DYRK3O43781 588 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PLA2G4BP0C869 781 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 UBCP0CG48 685 aaKnown RBP3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms