RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 LDLRP01130 860 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 CHRNGP07510 517 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 HSD3B1P14060 373 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 HSD3B2P26439 372 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 SERPINB5P36952 375 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 LIM2P55344 173 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 CSTF3Q12996 717 aaKnown RBP16.73■□□□□ 0.27
CLN3-247ENST00000636351 SLAMF1Q13291 335 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 MPP2Q14168 576 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 IMPG1Q17R60 797 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 ARL13AQ5H913 290 aaPredicted RBP16.73■□□□□ 0.27
CLN3-247ENST00000636351 CLEC6AQ6EIG7 209 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 IGFL3Q6UXB1 125 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 PAGE2Q7Z2X7 111 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 NACC2Q96BF6 587 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 ATP6V1G3Q96LB4 118 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 CSF3RQ99062 836 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 MAPKAP1Q9BPZ7 522 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 ZNF552Q9H707 407 aaPredicted RBP16.73■□□□□ 0.27
CLN3-247ENST00000636351 LYRM4Q9HD34 91 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 TNFRSF12AQ9NP84 129 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 LANCL2Q9NS86 450 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 C19orf25Q9UFG5 118 aaPredicted RBP16.73■□□□□ 0.27
CLN3-247ENST00000636351 FBXW2Q9UKT8 454 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 DAPP1Q9UN19 280 aa16.73■□□□□ 0.27
CLN3-247ENST00000636351 NUP210LQ5VU65 1888 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 WIPF3A6NGB9 483 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 AZIN1O14977 448 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 PRMT3O60678 531 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 EEDO75530 441 aaKnown RBP16.72■□□□□ 0.27
CLN3-247ENST00000636351 SCELO95171 688 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 HSPA4LO95757 839 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 CHEK2O96017 543 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 GBAP04062 536 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 SERPINE1P05121 402 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 CYC1P08574 325 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 DHRS4L1P0CG22 281 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 UROSP10746 265 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 CPN2P22792 545 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 SERPINB3P29508 390 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 DCTP40126 519 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 TSFMP43897 325 aaKnown RBP16.72■□□□□ 0.27
CLN3-247ENST00000636351 RHAGQ02094 409 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 NSDHLQ15738 373 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 TTMPQ5BVD1 217 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 KIRREL2Q6UWL6 708 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 LANCL3Q6ZV70 420 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 GBP7Q8N8V2 638 aaPredicted RBP16.72■□□□□ 0.27
CLN3-247ENST00000636351 AGR3Q8TD06 166 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 TSLPQ969D9 159 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 PTCHD1Q96NR3 888 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 MESP1Q9BRJ9 268 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 ACPTQ9BZG2 426 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 ZBTB20Q9HC78 741 aaPredicted RBP16.72■□□□□ 0.27
CLN3-247ENST00000636351 LYARQ9NX58 379 aaKnown RBP16.72■□□□□ 0.27
CLN3-247ENST00000636351 VPS29Q9UBQ0 182 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 PHF11Q9UIL8 331 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 SLC5A6Q9Y289 635 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 CENPEQ02224 2701 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 SCN2AQ99250 2005 aa16.72■□□□□ 0.27
CLN3-247ENST00000636351 HIVEP3Q5T1R4 2406 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 ANKUB1A6NFN9 424 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 CLDN4O14493 209 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 PCDH17O14917 1159 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 SASH3O75995 380 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 CHN1P15882 459 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 MAOAP21397 527 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 BSGP35613 385 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 EFNA3P52797 238 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 ARFIP1P53367 373 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 HMGCS1Q01581 520 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 ZNF33BQ06732 778 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 SPDYAQ5MJ70 313 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 SH2D4BQ5SQS7 431 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 QSOX2Q6ZRP7 698 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 COMMD6Q7Z4G1 85 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 ZCCHC7Q8N3Z6 543 aaKnown RBP16.71■□□□□ 0.27
CLN3-247ENST00000636351 OR11G2Q8NGC1 345 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 TM9SF4Q92544 642 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 C5orf34Q96MH7 638 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 PRDM9Q9NQV7 894 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 PRTFDC1Q9NRG1 225 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 NTNG1Q9Y2I2 539 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 MMACHCQ9Y4U1 282 aa16.71■□□□□ 0.27
CLN3-247ENST00000636351 COPG1Q9Y678 874 aaKnown RBP16.71■□□□□ 0.27
CLN3-247ENST00000636351 ITPR2Q14571 2701 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 A0A0A6YYD5 115 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 NSG1A0A0A6YYJ2 146 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 TMEM114B3SHH9 223 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 KLHL41O60662 606 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 KLK1P06870 262 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 FAM58BPP0C7Q3 252 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 BGNP21810 368 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 BUD31P41223 144 aaPredicted RBP16.7■□□□□ 0.26
CLN3-247ENST00000636351 BTG2P78543 158 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 BTKQ06187 659 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 ACTN3Q08043 901 aaPredicted RBP16.7■□□□□ 0.26
CLN3-247ENST00000636351 SLC13A2Q13183 592 aa16.7■□□□□ 0.26
CLN3-247ENST00000636351 ELOAQ14241 798 aaKnown RBP16.7■□□□□ 0.26
CLN3-247ENST00000636351 CRB2Q5IJ48 1285 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms