RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 C18orf21Q32NC0 220 aaPredicted RBP11.06□□□□□ -0.64
UPF3B-204ENST00000619445 METTL2BQ6P1Q9 378 aaKnown RBP11.06□□□□□ -0.64
UPF3B-204ENST00000619445 CLNKQ7Z7G1 428 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 SLC15A4Q8N697 577 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 ACBD4Q8NC06 268 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 SPATA4Q8NEY3 305 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 OR2M7Q8NG81 312 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 RHEBL1Q8TAI7 183 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 NUBPLQ8TB37 319 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 SLC22A8Q8TCC7 542 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 ZNF473Q8WTR7 871 aaKnown RBP11.06□□□□□ -0.64
UPF3B-204ENST00000619445 PTPMT1Q8WUK0 201 aaPredicted RBP11.06□□□□□ -0.64
UPF3B-204ENST00000619445 TANKQ92844 425 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 F2RL3Q96RI0 385 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 OR8D2Q9GZM6 311 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 ZDHHC11Q9H8X9 412 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 SMYD2Q9NRG4 433 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 SACM1LQ9NTJ5 587 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 TSC22D4Q9Y3Q8 395 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 PCDHGA11Q9Y5H2 935 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 SPG11Q96JI7 2443 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 C2CD3Q4AC94 2353 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 FBN2P35556 2912 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 CXorf49A8MYA2 514 aaPredicted RBP11.05□□□□□ -0.64
UPF3B-204ENST00000619445 SUPT3HB4E1H0 165 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 TGFBR3LH3BV60 316 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 UGDHO60701 494 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 SUPT3HO75486 399 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 P04436 131 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 LTA4HP09960 611 aaKnown RBP11.05□□□□□ -0.64
UPF3B-204ENST00000619445 CNR1P21554 472 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 CPN2P22792 545 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 BUD31P41223 144 aaPredicted RBP11.05□□□□□ -0.64
UPF3B-204ENST00000619445 SOX3P41225 446 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 RAP1GDS1P52306 607 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 HK2P52789 917 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 GPR85P60893 370 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 PLIN5Q00G26 463 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 SLMAPQ14BN4 828 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 FAM83EQ2M2I3 478 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 HYAL4Q2M3T9 481 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 DEPDC1Q5TB30 811 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 KHDRBS2Q5VWX1 349 aaKnown RBP11.05□□□□□ -0.64
UPF3B-204ENST00000619445 LIPJQ5W064 366 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 GRHL2Q6ISB3 625 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 IL20RBQ6UXL0 311 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 CEP128Q6ZU80 1094 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 FGD2Q7Z6J4 655 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 ISCA2Q86U28 154 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 FAM109AQ8N4B1 249 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 SPATA6LQ8N4H0 392 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 TMEM52Q8NDY8 209 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 OR7G3Q8NG95 312 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 LILRB4Q8NHJ6 448 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 SLC2A12Q8TD20 617 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 RGMAQ96B86 450 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 RBM18Q96H35 190 aaKnown RBP11.05□□□□□ -0.64
UPF3B-204ENST00000619445 DGAT2Q96PD7 388 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 CSF3RQ99062 836 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 TREX2Q9BQ50 279 aaPredicted RBP11.05□□□□□ -0.64
UPF3B-204ENST00000619445 DPH5Q9H2P9 285 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 ALG9Q9H6U8 611 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 IL1RL2Q9HB29 575 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 MCCC2Q9HCC0 563 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 KCNJ16Q9NPI9 418 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 ACOT9Q9Y305 439 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 ANGPTL3Q9Y5C1 460 aa11.05□□□□□ -0.64
UPF3B-204ENST00000619445 TNPO3Q9Y5L0 923 aaKnown RBP11.05□□□□□ -0.64
UPF3B-204ENST00000619445 A0A087X1B8 175 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 TMEM200CA6NKL6 621 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 WWP2O00308 870 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 SUSD5O60279 629 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 OR6B1O95007 311 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 SLC35E2BP0CK96 405 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 PCNAP12004 261 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 CD22P20273 847 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 PTX3P26022 381 aaPredicted RBP11.04□□□□□ -0.64
UPF3B-204ENST00000619445 RFC3P40938 356 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 STT3AP46977 705 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 IGLV3-21P80748 117 aaPredicted RBP11.04□□□□□ -0.64
UPF3B-204ENST00000619445 KBTBD12Q3ZCT8 623 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 C10orf62Q5T681 223 aaPredicted RBP11.04□□□□□ -0.64
UPF3B-204ENST00000619445 OR4C11Q6IEV9 310 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 KLC3Q6P597 504 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 C3P1Q6ZMU1 363 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 MEX3BQ6ZN04 569 aaKnown RBP11.04□□□□□ -0.64
UPF3B-204ENST00000619445 FAM47EQ6ZV65 393 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 ZNF295-AS1Q8N0V1 137 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 ZCCHC7Q8N3Z6 543 aaKnown RBP11.04□□□□□ -0.64
UPF3B-204ENST00000619445 PPM1NQ8N819 430 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 MYRIPQ8NFW9 859 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 EXT2Q93063 718 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 ATOH8Q96SQ7 321 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 MAPKAP1Q9BPZ7 522 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 TTTY12Q9BZ98 90 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 RPF2Q9H7B2 306 aaKnown RBP11.04□□□□□ -0.64
UPF3B-204ENST00000619445 WDR41Q9HAD4 459 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 PSD3Q9NYI0 1048 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 GRHL1Q9NZI5 618 aa11.04□□□□□ -0.64
UPF3B-204ENST00000619445 ANKHD1Q8IWZ3 2542 aaKnown RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms