RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 BROXQ5VW32 411 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 PHOSPHO1Q8TCT1 267 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 LRRC3BQ96PB8 259 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 TMEM79Q9BSE2 394 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 NTMT1Q9BV86 223 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 KCNK13Q9HB14 408 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 PRDM6Q9NQX0 595 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 DNAJC15Q9Y5T4 150 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 A0A1W2PRG6 482 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 BRINP1O60477 761 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 BCAS2O75934 225 aaPredicted RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 PRKACAP17612 351 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 IMPA1P29218 277 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 OR1D5P58170 312 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 ZNF630Q2M218 657 aaPredicted RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 RFX4Q33E94 735 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 LETMD1Q6P1Q0 360 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 IKBIPQ70UQ0 350 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 OR4N5Q8IXE1 308 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 FAM110BQ8TC76 370 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 HPS1Q92902 700 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 MOCOSQ96EN8 888 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 LRMDAQ9H2I8 198 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 CUTCQ9NTM9 273 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 SLC5A10A0PJK1 596 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 SHISA7A6NL88 538 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 ELOA3DA6NLF2 546 aaPredicted RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 H0YGG7 62 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 ADAMDEC1O15204 470 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 SCRG1O75711 98 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 BCHEP06276 602 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 CHRNB1P11230 501 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 ENDOUP21128 410 aaKnown RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 RORAP35398 523 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 IST1P53990 364 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 CLDN8P56748 225 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 ARF3P61204 181 aaPredicted RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 KCNJ2P63252 427 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 ATP1A4Q13733 1029 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 HLA-BQ31612 363 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 ELOA3BQ3SY89 546 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 ABHD17BQ5VST6 288 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 NUP54Q7Z3B4 507 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 PACS2Q86VP3 889 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 LILRA3Q8N6C8 439 aaPredicted RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 ELOA3Q8NG57 546 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 PIGXQ8TBF5 258 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 THAP3Q8WTV1 239 aaPredicted RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 CCDC74AQ96AQ1 378 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 BIRC8Q96P09 236 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 MAP3K3Q99759 626 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 LDAHQ9H6V9 325 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 CUEDC1Q9NWM3 386 aaPredicted RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 SERGEFQ9UGK8 458 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 PTBP2Q9UKA9 531 aaKnown RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 NUP205Q92621 2012 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 TSPAN11A1L157 253 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 FAM86C2PA6NEL3 165 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 ANHXE9PGG2 379 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 TNFRSF11BO00300 401 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 FLRT2O43155 660 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 TLX3O43711 291 aaPredicted RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 FAM20BO75063 409 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 CBFA2T3O75081 653 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 PSIP1O75475 530 aaKnown RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 GPIP06744 558 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 MYL12AP19105 171 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 CXCR1P25024 350 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 SLC19A1P41440 591 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 XCR1P46094 333 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 CLK1P49759 484 aaKnown RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 PLCXD2Q0VAA5 305 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 GRIK2Q13002 908 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 GRB7Q14451 532 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 ZNF311Q5JNZ3 666 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 IER5LQ5T953 404 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 NDUFAF5Q5TEU4 345 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 KANK2Q63ZY3 851 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 RBM44Q6ZP01 1051 aaKnown RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 TMEM151BQ8IW70 566 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 DEPDC4Q8N2C3 294 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 NUP43Q8NFH3 380 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 C16orf78Q8WTQ4 265 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 HDAC2Q92769 488 aaKnown RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 UBXN10Q96LJ8 280 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 TEX101Q9BY14 249 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 ULBP3Q9BZM4 244 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 GRIP2Q9C0E4 1043 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 SEMA6CQ9H3T2 930 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 GSTO2Q9H4Y5 243 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 MEAF6Q9HAF1 191 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 STARD5Q9NSY2 213 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 AIG1Q9NVV5 245 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 ZFR2Q9UPR6 939 aaKnown RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 MYOCOSA0A1B0GUC4 107 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 LMO7DNF2Z398 122 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 XKRYO14609 159 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 FGF4P08620 206 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 CERS1P27544 350 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 TEAD1P28347 426 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms