RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 PLCL1Q15111 1095 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 TBCEQ15813 527 aaPredicted RBP3.97□□□□□ -1.77
LIG3-211ENST00000588713 ZBTB6Q15916 424 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 SOWAHAQ2M3V2 549 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 TYSND1Q2T9J0 566 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 CTU2Q2VPK5 515 aaKnown RBP3.97□□□□□ -1.77
LIG3-211ENST00000588713 ADPRMQ3LIE5 342 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 UGT3A2Q3SY77 523 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 AMZ1Q400G9 498 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 ZNF404Q494X3 552 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 ZFP69Q49AA0 526 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 PYCR3Q53H96 274 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 XKR7Q5GH72 579 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 CRB2Q5IJ48 1285 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 PITRM1Q5JRX3 1037 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 TOR1AIP1Q5JTV8 583 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 ATAD3CQ5T2N8 411 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 CERCAMQ5T4B2 595 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 SAMD5Q5TGI4 173 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 UBE2UQ5VVX9 321 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 RSBN1Q5VWQ0 802 aaPredicted RBP3.97□□□□□ -1.77
LIG3-211ENST00000588713 STEAP3Q658P3 488 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 JADE1Q6IE81 842 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 CAPN13Q6MZZ7 669 aaPredicted RBP3.97□□□□□ -1.77
LIG3-211ENST00000588713 PMF1Q6P1K2 205 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 GCNT7Q6ZNI0 430 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 USP43Q70EL4 1123 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 HTR3DQ70Z44 454 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 CHST15Q7LFX5 561 aaPredicted RBP3.97□□□□□ -1.77
LIG3-211ENST00000588713 PID1Q7Z2X4 250 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 PIWIL3Q7Z3Z3 882 aaKnown RBP3.97□□□□□ -1.77
LIG3-211ENST00000588713 ADAMTSL2Q86TH1 951 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 TRIM69Q86WT6 500 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 LRRC52Q8N7C0 313 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 AMER2Q8N7J2 671 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 POC5Q8NA72 575 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 CCNYQ8ND76 341 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 OR8J3Q8NGG0 315 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 OR5K1Q8NHB7 308 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 MCFD2Q8NI22 146 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 PSMA8Q8TAA3 256 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 ZNF417Q8TAU3 575 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 MCOLN3Q8TDD5 553 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 BLOC1S5Q8TDH9 187 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 IPCEF1Q8WWN9 437 aaPredicted RBP3.97□□□□□ -1.77
LIG3-211ENST00000588713 PIK3R3Q92569 461 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 NT5C3BQ969T7 300 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 TMCO6Q96DC7 493 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 MTFMTQ96DP5 389 aaKnown RBP3.97□□□□□ -1.77
LIG3-211ENST00000588713 CCDC74BQ96LY2 380 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 TEKT5Q96M29 485 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 SLC2A13Q96QE2 648 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 SIGLEC11Q96RL6 698 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 ZNF587Q96SQ5 575 aaPredicted RBP3.97□□□□□ -1.77
LIG3-211ENST00000588713 NPY6RQ99463 290 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 PITX2Q99697 317 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 DHRS9Q9BPW9 319 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 TBL1YQ9BQ87 522 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 ACBD6Q9BR61 282 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 DDA1Q9BW61 102 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 CHID1Q9BWS9 393 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 TTLL2Q9BWV7 592 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 UGT2B28Q9BY64 529 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 CEP41Q9BYV8 373 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 CLPBQ9H078 707 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 LIME1Q9H400 295 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 SOX17Q9H6I2 414 aaPredicted RBP3.97□□□□□ -1.77
LIG3-211ENST00000588713 AKTIPQ9H8T0 292 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 C12orf10Q9HB07 376 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 NTN4Q9HB63 628 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 PCDH12Q9NPG4 1184 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 SLC52A3Q9NQ40 469 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 TPSG1Q9NRR2 321 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 TREX1Q9NSU2 369 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 PIH1D1Q9NWS0 290 aaKnown RBP3.97□□□□□ -1.77
LIG3-211ENST00000588713 APOBEC3BQ9UH17 382 aaKnown RBP3.97□□□□□ -1.77
LIG3-211ENST00000588713 POLG2Q9UHN1 485 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 VPS51Q9UID3 782 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 BTRCQ9Y297 605 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 CAB39Q9Y376 341 aaPredicted RBP3.97□□□□□ -1.77
LIG3-211ENST00000588713 FIS1Q9Y3D6 152 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 GPR45Q9Y5Y3 372 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 PMF1-BGLAPU3KQ54 211 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 SCN1AP35498 2009 aa3.97□□□□□ -1.77
LIG3-211ENST00000588713 KMT2CQ8NEZ4 4911 aaKnown RBP3.97□□□□□ -1.77
LIG3-211ENST00000588713 TLN2Q9Y4G6 2542 aa3.96□□□□□ -1.77
LIG3-211ENST00000588713 MXRA5Q9NR99 2828 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 PRRC2CQ9Y520 2896 aaKnown RBP3.96□□□□□ -1.78
LIG3-211ENST00000588713 LOC100130705A0A1B0GUX0 176 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 OR2A25A4D2G3 310 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 SERINC4A6NH21 518 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.96□□□□□ -1.78
LIG3-211ENST00000588713 EFCAB9A8MZ26 197 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 FAM220BPB1ANY3 271 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 KCNK1O00180 336 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 CCL21O00585 134 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 PIRO00625 290 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 UBFD1O14562 309 aaKnown RBP3.96□□□□□ -1.78
LIG3-211ENST00000588713 TOR1BO14657 336 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 YY2O15391 372 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms