RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 PCDHGB1Q9Y5G3 927 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 SLC16A8O95907 504 aa14.66□□□□□ -0.06
VPS53-218ENST00000575207 FTCDO95954 541 aa14.66□□□□□ -0.06
VPS53-218ENST00000575207 CGAP01215 116 aa14.66□□□□□ -0.06
VPS53-218ENST00000575207 PSMB4P28070 264 aa14.66□□□□□ -0.06
VPS53-218ENST00000575207 BMPR2Q13873 1038 aa14.66□□□□□ -0.06
VPS53-218ENST00000575207 SPARCL1Q14515 664 aa14.66□□□□□ -0.06
VPS53-218ENST00000575207 POU6F1Q14863 301 aa14.66□□□□□ -0.06
VPS53-218ENST00000575207 ELAVL1Q15717 326 aaKnown RBP14.66□□□□□ -0.06
VPS53-218ENST00000575207 PHKG1Q16816 387 aa14.66□□□□□ -0.06
VPS53-218ENST00000575207 EIPR1Q53HC9 387 aa14.66□□□□□ -0.06
VPS53-218ENST00000575207 MORN4Q8NDC4 146 aa14.66□□□□□ -0.06
VPS53-218ENST00000575207 GABPB2Q8TAK5 448 aaPredicted RBP14.66□□□□□ -0.06
VPS53-218ENST00000575207 SPACA9Q96E40 222 aaPredicted RBP14.66□□□□□ -0.06
VPS53-218ENST00000575207 QKIQ96PU8 341 aaKnown RBP eCLIP14.66□□□□□ -0.06
VPS53-218ENST00000575207 PKP4Q99569 1192 aa14.66□□□□□ -0.06
VPS53-218ENST00000575207 FERMT1Q9BQL6 677 aa14.66□□□□□ -0.06
VPS53-218ENST00000575207 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.66□□□□□ -0.06
VPS53-218ENST00000575207 CNOT11Q9UKZ1 510 aaKnown RBP14.66□□□□□ -0.06
VPS53-218ENST00000575207 ANKRD33BA6NCL7 494 aa14.65□□□□□ -0.06
VPS53-218ENST00000575207 MROH6A6NGR9 719 aa14.65□□□□□ -0.06
VPS53-218ENST00000575207 KRT1P04264 644 aa14.65□□□□□ -0.06
VPS53-218ENST00000575207 SKILP12757 684 aa14.65□□□□□ -0.06
VPS53-218ENST00000575207 KIAA1328Q86T90 577 aa14.65□□□□□ -0.06
VPS53-218ENST00000575207 DTX2Q86UW9 622 aa14.65□□□□□ -0.06
VPS53-218ENST00000575207 C10orf105Q8TEF2 133 aa14.65□□□□□ -0.06
VPS53-218ENST00000575207 FAM168AQ92567 244 aa14.65□□□□□ -0.06
VPS53-218ENST00000575207 P3H4Q92791 437 aa14.65□□□□□ -0.06
VPS53-218ENST00000575207 LRRC45Q96CN5 670 aa14.65□□□□□ -0.06
VPS53-218ENST00000575207 PANX3Q96QZ0 392 aa14.65□□□□□ -0.06
VPS53-218ENST00000575207 BHLHE41Q9C0J9 482 aaPredicted RBP14.65□□□□□ -0.06
VPS53-218ENST00000575207 OCEL1Q9H607 264 aa14.65□□□□□ -0.06
VPS53-218ENST00000575207 TSR3Q9UJK0 312 aaKnown RBP14.65□□□□□ -0.06
VPS53-218ENST00000575207 B3GALT5Q9Y2C3 310 aa14.65□□□□□ -0.06
VPS53-218ENST00000575207 RNF115Q9Y4L5 304 aa14.65□□□□□ -0.06
VPS53-218ENST00000575207 CLCA3PQ9Y6N3 262 aa14.65□□□□□ -0.06
VPS53-218ENST00000575207 H0Y3Z8 333 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 CD8BP10966 210 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 SRP14P37108 136 aaKnown RBP14.64□□□□□ -0.07
VPS53-218ENST00000575207 KIR2DL2P43627 348 aaPredicted RBP14.64□□□□□ -0.07
VPS53-218ENST00000575207 RPL21P46778 160 aaKnown RBP14.64□□□□□ -0.07
VPS53-218ENST00000575207 CCR8P51685 355 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 PCDH1Q08174 1060 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 ASPHQ12797 758 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 PWP1Q13610 501 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 TFDP2Q14188 446 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 ODF2Q5BJF6 829 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 TBCELQ5QJ74 424 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 FNDC7Q5VTL7 733 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 PTRHD1Q6GMV3 140 aaKnown RBP14.64□□□□□ -0.07
VPS53-218ENST00000575207 DND1Q8IYX4 353 aaKnown RBP14.64□□□□□ -0.07
VPS53-218ENST00000575207 ZNF321PQ8N8H1 164 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 CNEP1R1Q8N9A8 125 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 MFSD9Q8NBP5 474 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 DAZLQ92904 295 aaKnown RBP14.64□□□□□ -0.07
VPS53-218ENST00000575207 CTHRC1Q96CG8 243 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 KLHL4Q9C0H6 718 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 RHBGQ9H310 441 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 ALG2Q9H553 416 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 FAM114A2Q9NRY5 505 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 HOMER3Q9NSC5 361 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 C15orf41Q9Y2V0 281 aa14.64□□□□□ -0.07
VPS53-218ENST00000575207 CEP104O60308 925 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 CST8O60676 142 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 PSIP1O75475 530 aaKnown RBP14.63□□□□□ -0.07
VPS53-218ENST00000575207 TGM6O95932 706 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 TGFAP01135 160 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 PPARGP37231 505 aaPredicted RBP14.63□□□□□ -0.07
VPS53-218ENST00000575207 HSD17B7P56937 341 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 GBX1Q14549 363 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 RPS6KA1Q15418 735 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 ZNF672Q499Z4 452 aaPredicted RBP14.63□□□□□ -0.07
VPS53-218ENST00000575207 AFTPHQ6ULP2 937 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 GPSM1Q86YR5 675 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 GRAMD2AQ8IUY3 354 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 SLC15A4Q8N697 577 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 ZNF525Q8N782 197 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 TC2NQ8N9U0 490 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 NUP43Q8NFH3 380 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 OR10G3Q8NGC4 313 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 PTPMT1Q8WUK0 201 aaPredicted RBP14.63□□□□□ -0.07
VPS53-218ENST00000575207 ADAD1Q96M93 576 aaKnown RBP14.63□□□□□ -0.07
VPS53-218ENST00000575207 GNRHR2Q96P88 292 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 NTMT1Q9BV86 223 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 CTTNBP2NLQ9P2B4 639 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 LCMT1Q9UIC8 334 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 METRNQ9UJH8 293 aa14.63□□□□□ -0.07
VPS53-218ENST00000575207 HACD1B0YJ81 288 aa14.62□□□□□ -0.07
VPS53-218ENST00000575207 PRMT5O14744 637 aaPredicted RBP14.62□□□□□ -0.07
VPS53-218ENST00000575207 NDUFS4O43181 175 aa14.62□□□□□ -0.07
VPS53-218ENST00000575207 HCRTR2O43614 444 aa14.62□□□□□ -0.07
VPS53-218ENST00000575207 GOT2P00505 430 aaKnown RBP14.62□□□□□ -0.07
VPS53-218ENST00000575207 ZNF888P0CJ79 500 aaPredicted RBP14.62□□□□□ -0.07
VPS53-218ENST00000575207 PAMP19021 973 aa14.62□□□□□ -0.07
VPS53-218ENST00000575207 ATP5DP30049 168 aa14.62□□□□□ -0.07
VPS53-218ENST00000575207 OR2A2Q6IF42 318 aa14.62□□□□□ -0.07
VPS53-218ENST00000575207 MFSD7Q6UXD7 560 aa14.62□□□□□ -0.07
VPS53-218ENST00000575207 ZNF610Q8N9Z0 462 aa14.62□□□□□ -0.07
VPS53-218ENST00000575207 NUBPLQ8TB37 319 aa14.62□□□□□ -0.07
VPS53-218ENST00000575207 NEUROG1Q92886 237 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms