RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 B3GNT7Q8NFL0 401 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 OR14A16Q8NHC5 309 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 TANKQ92844 425 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 DAZLQ92904 295 aaKnown RBP12.17□□□□□ -0.46
CLK3-224ENST00000568605 CNDP1Q96KN2 507 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 ZNF354BQ96LW1 612 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 LMF1Q96S06 567 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 MRPL1Q9BYD6 325 aaKnown RBP12.17□□□□□ -0.46
CLK3-224ENST00000568605 ILKAPQ9H0C8 392 aaPredicted RBP12.17□□□□□ -0.46
CLK3-224ENST00000568605 C12orf65Q9H3J6 166 aaKnown RBP12.17□□□□□ -0.46
CLK3-224ENST00000568605 EML4Q9HC35 981 aaKnown RBP12.17□□□□□ -0.46
CLK3-224ENST00000568605 SLAMF7Q9NQ25 335 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 PNO1Q9NRX1 252 aaKnown RBP12.17□□□□□ -0.46
CLK3-224ENST00000568605 FARSBQ9NSD9 589 aaKnown RBP12.17□□□□□ -0.46
CLK3-224ENST00000568605 KCMF1Q9P0J7 381 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 ZNF225Q9UK10 706 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 CLCA3PQ9Y6N3 262 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 BSNQ9UPA5 3926 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 TYROBPO43914 113 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 NPHS1O60500 1241 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 EEDO75530 441 aaKnown RBP12.16□□□□□ -0.46
CLK3-224ENST00000568605 ZWINTO95229 277 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 CELA2AP08217 269 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 UROSP10746 265 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 SOX11P35716 441 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 HNRNPFP52597 415 aaKnown RBP12.16□□□□□ -0.46
CLK3-224ENST00000568605 MAPK12P53778 367 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 ARG2P78540 354 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 ACSM2AQ08AH3 577 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 MEP1AQ16819 746 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 TCHHL1Q5QJ38 904 aaPredicted RBP12.16□□□□□ -0.46
CLK3-224ENST00000568605 C6orf163Q5TEZ5 329 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 ACSM2BQ68CK6 577 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 MRM1Q6IN84 353 aaKnown RBP12.16□□□□□ -0.46
CLK3-224ENST00000568605 IGFL2Q6UWQ7 119 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 LINC00696Q6ZRV3 163 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 COMMD6Q7Z4G1 85 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 LGI4Q8N135 537 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 TMEM52Q8NDY8 209 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 PPP1R14CQ8TAE6 165 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 VMP1Q96GC9 406 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 ART5Q96L15 291 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 HBEGFQ99075 208 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 FAIM2Q9BWQ8 316 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 ALOXE3Q9BYJ1 711 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 RNF32Q9H0A6 362 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 RRAGDQ9NQL2 400 aaPredicted RBP12.16□□□□□ -0.46
CLK3-224ENST00000568605 SLC17A7Q9P2U7 560 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 B3GNT3Q9Y2A9 372 aa12.16□□□□□ -0.46
CLK3-224ENST00000568605 SERTM1A2A2V5 107 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 A8MUI8 341 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 CDK2AP1O14519 115 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 PROM1O43490 865 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 TMPRSS11DO60235 418 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 LDB3O75112 727 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 AIFM1O95831 613 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 KLK1P06870 262 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 TNNI3P19429 210 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 PIK3R1P27986 724 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 ALDH3A1P30838 453 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 GSTM5P46439 218 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 CLCN2P51788 898 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 GALNT1Q10472 559 aaPredicted RBP12.15□□□□□ -0.46
CLK3-224ENST00000568605 TLR1Q15399 786 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 NADK2Q4G0N4 442 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 BEND6Q5SZJ8 279 aaPredicted RBP12.15□□□□□ -0.46
CLK3-224ENST00000568605 B3GNTL1Q67FW5 361 aaPredicted RBP12.15□□□□□ -0.46
CLK3-224ENST00000568605 SLC6A19Q695T7 634 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 CUZD1Q86UP6 607 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 C1orf52Q8N6N3 182 aaKnown RBP12.15□□□□□ -0.46
CLK3-224ENST00000568605 PKNOX2Q96KN3 472 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 DGAT2Q96PD7 388 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 KCNA7Q96RP8 456 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 GATA5Q9BWX5 397 aaPredicted RBP12.15□□□□□ -0.46
CLK3-224ENST00000568605 EPN3Q9H201 632 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 COPS7AQ9UBW8 275 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 VTI1BQ9UEU0 232 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 MCM8Q9UJA3 840 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 ATG4BQ9Y4P1 393 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 ASB4Q9Y574 426 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 TIMM22Q9Y584 194 aa12.15□□□□□ -0.46
CLK3-224ENST00000568605 GNG14A0A1W2PPG7 69 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 C1orf226A1L170 272 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 TTLL8A6PVC2 850 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 A8MUA0 341 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 C17orf105B2RV13 164 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 FCHO1O14526 889 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 UBFD1O14562 309 aaKnown RBP12.14□□□□□ -0.47
CLK3-224ENST00000568605 AZIN1O14977 448 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 PCDH7O60245 1069 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 OR10H2O60403 315 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 GBAP04062 536 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 BPGMP07738 259 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 NEFHP12036 1026 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 TPP2P29144 1249 aaPredicted RBP12.14□□□□□ -0.47
CLK3-224ENST00000568605 STT3AP46977 705 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 SERPINB4P48594 390 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 HTR6P50406 440 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 TRA2BP62995 288 aaKnown RBP12.14□□□□□ -0.47
CLK3-224ENST00000568605 IGLV3-21P80748 117 aaPredicted RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms