RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 RGS14O43566 566 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 HNRNPCL1O60812 293 aaKnown RBP12.64□□□□□ -0.39
CLK3-218ENST00000566926 SKAP2O75563 359 aaPredicted RBP12.64□□□□□ -0.39
CLK3-218ENST00000566926 ATP5HO75947 161 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 COX6A1P12074 109 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 RNH1P13489 461 aaKnown RBP12.64□□□□□ -0.39
CLK3-218ENST00000566926 HSD3B1P14060 373 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 HSD3B2P26439 372 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 RAB8AP61006 207 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 PHEXP78562 749 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 HYAL2Q12891 473 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 RAPSNQ13702 412 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 SLC9B1Q4ZJI4 515 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 XKR7Q5GH72 579 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 OGFOD2Q6N063 350 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 MED27Q6P2C8 311 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 TRIM40Q6P9F5 258 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 IGFL3Q6UXB1 125 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 CCDC121Q6ZUS5 278 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 TRIM46Q7Z4K8 759 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 CLNKQ7Z7G1 428 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 MTDHQ86UE4 582 aaKnown RBP12.64□□□□□ -0.39
CLK3-218ENST00000566926 MYLK4Q86YV6 388 aaPredicted RBP12.64□□□□□ -0.39
CLK3-218ENST00000566926 OR2L5Q8NG80 312 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 THOC3Q96J01 351 aaKnown RBP12.64□□□□□ -0.39
CLK3-218ENST00000566926 EBF4Q9BQW3 602 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 ROGDIQ9GZN7 287 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 REXO4Q9GZR2 422 aaKnown RBP12.64□□□□□ -0.39
CLK3-218ENST00000566926 ZNF700Q9H0M5 742 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 MYLK2Q9H1R3 596 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 EPS8L2Q9H6S3 715 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 ZNF160Q9HCG1 818 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 TNFRSF12AQ9NP84 129 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 SAR1AQ9NR31 198 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 TMEM45AQ9NWC5 275 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 ZNF490Q9ULM2 529 aaPredicted RBP12.64□□□□□ -0.39
CLK3-218ENST00000566926 FIS1Q9Y3D6 152 aa12.64□□□□□ -0.39
CLK3-218ENST00000566926 CPAMD8Q8IZJ3 1885 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 MAGEB17A8MXT2 336 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 NPIPB8E9PQR5 432 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 FCHO1O14526 889 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 PIP5K1BO14986 540 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 ERI3O43414 337 aaKnown RBP12.63□□□□□ -0.39
CLK3-218ENST00000566926 B3GALT2O43825 422 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 JRKO75564 520 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 SERPINA7P05543 415 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 FHP07954 510 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 EPHA3P29320 983 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 ATP4BP51164 291 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 FOXA1P55317 472 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 SNRPNP63162 240 aaKnown RBP12.63□□□□□ -0.39
CLK3-218ENST00000566926 BTN3A2P78410 334 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 TLE1Q04724 770 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 EEF1A2Q05639 463 aaKnown RBP12.63□□□□□ -0.39
CLK3-218ENST00000566926 MAD2L1Q13257 205 aaPredicted RBP12.63□□□□□ -0.39
CLK3-218ENST00000566926 KRT72Q14CN4 511 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 ADPRMQ3LIE5 342 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 LSM12Q3MHD2 195 aaKnown RBP12.63□□□□□ -0.39
CLK3-218ENST00000566926 ATP6AP1LQ52LC2 224 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 FRG2Q64ET8 278 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 NXNQ6DKJ4 435 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 JMJD6Q6NYC1 403 aaPredicted RBP12.63□□□□□ -0.39
CLK3-218ENST00000566926 CHSY3Q70JA7 882 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 LARP4Q71RC2 724 aaKnown RBP eCLIP12.63□□□□□ -0.39
CLK3-218ENST00000566926 SPATA19Q7Z5L4 167 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 CPEB2Q7Z5Q1 589 aaKnown RBP12.63□□□□□ -0.39
CLK3-218ENST00000566926 LAS2Q8IYD9 372 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 FAM9CQ8IZT9 166 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 FITM2Q8N6M3 262 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 OR5T3Q8NGG3 340 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 ADAMTS18Q8TE60 1221 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 PNPLA2Q96AD5 504 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 ERP27Q96DN0 273 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 MS4A6EQ96DS6 147 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 PPP3R2Q96LZ3 170 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 CDK15Q96Q40 435 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 FRG2BQ96QU4 278 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 LMF1Q96S06 567 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 CENPKQ9BS16 269 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 KLHL31Q9H511 634 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 COPS7BQ9H9Q2 264 aaPredicted RBP12.63□□□□□ -0.39
CLK3-218ENST00000566926 BRF2Q9HAW0 419 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 NMRK1Q9NWW6 199 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 RNF11Q9Y3C5 154 aa12.63□□□□□ -0.39
CLK3-218ENST00000566926 A0A1B0GTL3 188 aa12.62□□□□□ -0.39
CLK3-218ENST00000566926 SYNDIG1LA6NDD5 238 aa12.62□□□□□ -0.39
CLK3-218ENST00000566926 MANBAO00462 879 aa12.62□□□□□ -0.39
CLK3-218ENST00000566926 PRAMEF4O60810 478 aa12.62□□□□□ -0.39
CLK3-218ENST00000566926 PRR35P0CG20 571 aa12.62□□□□□ -0.39
CLK3-218ENST00000566926 LBPP18428 481 aa12.62□□□□□ -0.39
CLK3-218ENST00000566926 CD22P20273 847 aa12.62□□□□□ -0.39
CLK3-218ENST00000566926 PRPH2P23942 346 aa12.62□□□□□ -0.39
CLK3-218ENST00000566926 RASSF2P50749 326 aa12.62□□□□□ -0.39
CLK3-218ENST00000566926 MNAT1P51948 309 aa12.62□□□□□ -0.39
CLK3-218ENST00000566926 ACTN3Q08043 901 aaPredicted RBP12.62□□□□□ -0.39
CLK3-218ENST00000566926 SF3A3Q12874 501 aaKnown RBP eCLIP12.62□□□□□ -0.395e-6■■■■■ 35.2
CLK3-218ENST00000566926 CSTF3Q12996 717 aaKnown RBP12.62□□□□□ -0.39
CLK3-218ENST00000566926 PCOLCEQ15113 449 aa12.62□□□□□ -0.39
CLK3-218ENST00000566926 ZRSR2Q15696 482 aaKnown RBP12.62□□□□□ -0.39
CLK3-218ENST00000566926 NSDHLQ15738 373 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms