RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 LTB4R2Q9NPC1 389 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 TUBG2Q9NRH3 451 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 RGS18Q9NS28 235 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 RNF146Q9NTX7 359 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 PDP1Q9P0J1 537 aaPredicted RBP4.85□□□□□ -1.63
VPS35-205ENST00000563984 NKX1-2Q9UD57 310 aaPredicted RBP4.85□□□□□ -1.63
VPS35-205ENST00000563984 HAO1Q9UJM8 370 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 MKLN1Q9UL63 735 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 PADI2Q9Y2J8 665 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 STARD10Q9Y365 291 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 NPHP3Q7Z494 1330 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 CNTNAP2Q9UHC6 1331 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 RIMS2Q9UQ26 1411 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 CFTRP13569 1480 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 ZNF518AQ6AHZ1 1483 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 SCAF11Q99590 1463 aaKnown RBP4.85□□□□□ -1.63
VPS35-205ENST00000563984 TAF1LQ8IZX4 1826 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 HECW2Q9P2P5 1572 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 NUP160Q12769 1436 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 MROH7-TTC4A0A0A0MT08 1334 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 WDR17Q8IZU2 1322 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 TEX13CA0A0J9YWL9 993 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 A0A1W2PPQ1 181 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 A0A1W2PPV4 95 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 GLOD5A6NK44 160 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 SMIM23A6NLE4 172 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 OR52A4PA6NMU1 304 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 ERI2A8K979 691 aaKnown RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 TMEM238C9JI98 176 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 F8VP50 259 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 K7EQM0 130 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 TLR4O00206 839 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 TFECO14948 347 aaPredicted RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 TCAPO15273 167 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 STX7O15400 261 aaKnown RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 GPAA1O43292 621 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 TMPRSS11DO60235 418 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 HCN1O60741 890 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 SCN2BO60939 215 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 CSDE1O75534 798 aaKnown RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 ZBTB11O95625 1053 aaPredicted RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 TOP3BO95985 862 aaKnown RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 MT-CO3P00414 261 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 F9P00740 461 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 IFNA2P01563 188 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 MT-ND2P03891 347 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 SERPINB2P05120 415 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 SERPING1P05155 500 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 LCKP06239 509 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 RBP1P09455 135 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 SMIM6P0DI80 62 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 PRF1P14222 555 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 FOSL2P15408 326 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 CREB1P16220 341 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 MAGP20916 626 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 DRD5P21918 477 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 DGKAP23743 735 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 IL1R2P27930 398 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 PPP2R1BP30154 601 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 OR1E1P30953 314 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 MC5RP33032 325 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 RCVRNP35243 200 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 TGFBR2P37173 567 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 EMP2P54851 167 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 NUP107P57740 925 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 RGS8P57771 180 aaPredicted RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 UBE2G2P60604 165 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 PSME3P61289 254 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 CDK16Q00536 496 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 ZNF45Q02386 682 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 ZNF268Q14587 947 aaPredicted RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 MVPQ14764 893 aaKnown RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 TGFBIQ15582 683 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 NAB2Q15742 525 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 STXBP2Q15833 593 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 TAF1BQ53T94 588 aaPredicted RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 COQ5Q5HYK3 327 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 EARS2Q5JPH6 523 aaKnown RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 Q5PR19 223 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 PHYHD1Q5SRE7 291 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 PLAG1Q6DJT9 500 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 OR5M10Q6IEU7 315 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 C11orf87Q6NUJ2 197 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 KCTD8Q6ZWB6 473 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 C1orf186Q6ZWK4 172 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 HAUS6Q7Z4H7 955 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 SERINC5Q86VE9 423 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 CCDC71Q8IV32 467 aaPredicted RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 CCDC117Q8IWD4 279 aaPredicted RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 KLHL7Q8IXQ5 586 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 PRSS58Q8IYP2 241 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 C9orf106Q8NAJ2 232 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 BEST2Q8NFU1 509 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 FAM172AQ8WUF8 416 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 SLC35F5Q8WV83 523 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 C22orf15Q8WYQ4 148 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 FIG4Q92562 907 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 HAS2Q92819 552 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 ZNF597Q96LX8 424 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 RNF145Q96MT1 663 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms