RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 Q6ZS92 163 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 CCDC80Q76M96 950 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 MILR1Q7Z6M3 343 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 LAPTM4BQ86VI4 370 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 NUDT13Q86X67 352 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 SMYD1Q8NB12 490 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 OR7G3Q8NG95 312 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 DCAKDQ8WVC6 231 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 TMEM125Q96AQ2 219 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 C8orf44Q96CB5 159 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 PGM2Q96G03 612 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 MACROD1Q9BQ69 325 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 UTP23Q9BRU9 249 aaKnown RBP8.15□□□□□ -1.11
USP3-208ENST00000558285 STMN3Q9NZ72 180 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 PTGFRNQ9P2B2 879 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 COPS7AQ9UBW8 275 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 PPT2Q9UMR5 302 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 CLCA3PQ9Y6N3 262 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 SPTBP11277 2137 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 LOC100996750A0A140TA64 210 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 MAGEA13PA6NCF6 341 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 A8MUI8 341 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 FOXE1O00358 373 aaPredicted RBP8.14□□□□□ -1.11
USP3-208ENST00000558285 BIRC5O15392 142 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 ZZEF1O43149 2961 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 CTNSO60931 367 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 CRCPO75575 148 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 CDC123O75794 336 aaPredicted RBP8.14□□□□□ -1.11
USP3-208ENST00000558285 SMIM10L1P0DMW3 83 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 TNNI3P19429 210 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 CPN2P22792 545 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 ATP5F1P24539 256 aaPredicted RBP8.14□□□□□ -1.11
USP3-208ENST00000558285 CLCN2P51788 898 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 HERVK_113P63132 956 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 IRF9Q00978 393 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 E2F2Q14209 437 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 PCOLCEQ15113 449 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 INPP5JQ15735 1006 aaPredicted RBP8.14□□□□□ -1.11
USP3-208ENST00000558285 ZXDCQ2QGD7 858 aaPredicted RBP8.14□□□□□ -1.11
USP3-208ENST00000558285 CCDC153Q494R4 210 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 GGTA1PQ4G0N0 100 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 NADK2Q4G0N4 442 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 CFAP157Q5JU67 520 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 RPUSD3Q6P087 351 aaKnown RBP8.14□□□□□ -1.11
USP3-208ENST00000558285 TMEM154Q6P9G4 183 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 RINLQ6ZS11 566 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 GOLGA7Q7Z5G4 137 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 PDSS2Q86YH6 399 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 CA13Q8N1Q1 262 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 BCORP1Q8N888 145 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 TMEM178AQ8NBL3 297 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 OR14A16Q8NHC5 309 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 UHMK1Q8TAS1 419 aaKnown RBP8.14□□□□□ -1.11
USP3-208ENST00000558285 RDH11Q8TC12 318 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 BRIX1Q8TDN6 353 aaKnown RBP8.14□□□□□ -1.11
USP3-208ENST00000558285 DNAJC9Q8WXX5 260 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 HAS2Q92819 552 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 MOCOSQ96EN8 888 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 SMIM10Q96HG1 83 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 NR1H4Q96RI1 486 aaPredicted RBP8.14□□□□□ -1.11
USP3-208ENST00000558285 NTMT1Q9BV86 223 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 TMEM109Q9BVC6 243 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 ERVK-6Q9BXR3 956 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 MS4A8Q9BY19 250 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 KRTAP4-6Q9BYQ5 205 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 DEFB126Q9BYW3 111 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 ADAP2Q9NPF8 381 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 GRID1Q9ULK0 1009 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 DAPP1Q9UN19 280 aa8.14□□□□□ -1.11
USP3-208ENST00000558285 SNRNP200O75643 2136 aaKnown RBP8.13□□□□□ -1.11
USP3-208ENST00000558285 OR5H15A6NDH6 313 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 SAGE2PA6NJ88 616 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 FFAR3O14843 346 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 GPR42O15529 346 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 SNX3O60493 162 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 SORBS2O94875 1100 aaKnown RBP8.13□□□□□ -1.11
USP3-208ENST00000558285 NUDT7P0C024 238 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 NUDT17P0C025 328 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 FAM153BP0C7A2 387 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 MYL2P10916 166 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 HSD3B1P14060 373 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 CPA3P15088 417 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 HIST1H1TP22492 207 aaPredicted RBP8.13□□□□□ -1.11
USP3-208ENST00000558285 HSD3B2P26439 372 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 CD97P48960 835 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 PER3P56645 1201 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 OLR1P78380 273 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 PLIN5Q00G26 463 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 OCRLQ01968 901 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 RHAGQ02094 409 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 OC90Q02509 493 aaPredicted RBP8.13□□□□□ -1.11
USP3-208ENST00000558285 RBPJQ06330 500 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 DLG1Q12959 904 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 ELAVL1Q15717 326 aaKnown RBP8.13□□□□□ -1.11
USP3-208ENST00000558285 CPSF6Q16630 551 aaKnown RBP eCLIP8.13□□□□□ -1.11
USP3-208ENST00000558285 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.13□□□□□ -1.11
USP3-208ENST00000558285 C18orf21Q32NC0 220 aaPredicted RBP8.13□□□□□ -1.11
USP3-208ENST00000558285 FAM153CQ494X1 144 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 DEPDC1Q5TB30 811 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 FRG2Q64ET8 278 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms