RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 CLEC6AQ6EIG7 209 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 ASB18Q6ZVZ8 466 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 HOMEZQ8IX15 550 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 C1orf52Q8N6N3 182 aaKnown RBP12.74□□□□□ -0.37
SHMT2-228ENST00000557302 SMAD5Q99717 465 aaKnown RBP12.74□□□□□ -0.37
SHMT2-228ENST00000557302 PAIP2Q9BPZ3 127 aaKnown RBP12.74□□□□□ -0.37
SHMT2-228ENST00000557302 RPF2Q9H7B2 306 aaKnown RBP12.74□□□□□ -0.37
SHMT2-228ENST00000557302 VIPAS39Q9H9C1 493 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 WDR41Q9HAD4 459 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 FIS1Q9Y3D6 152 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 ZNF451Q9Y4E5 1061 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 A0A1W2PR48 441 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 TGFBR3LH3BV60 316 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 LDB3O75112 727 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 GUCY1B2O75343 617 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 AIFM1O95831 613 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 PDGFAP04085 211 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 PRB1P04280 392 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 SERPINE1P05121 402 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 UQCRHP07919 91 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 CELA2AP08217 269 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 FGF4P08620 206 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 NEFHP12036 1026 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 NR1D1P20393 614 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 PPP2R1BP30154 601 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 ACSM2AQ08AH3 577 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 NFATC3Q12968 1075 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 SERTAD2Q14140 314 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 CHI3L2Q15782 390 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 SPIN4Q56A73 249 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 SPDYAQ5MJ70 313 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 AGAP7PQ5VUJ5 663 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 KANK2Q63ZY3 851 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 ACSM2BQ68CK6 577 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 C18orf63Q68DL7 685 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 JMJD6Q6NYC1 403 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-228ENST00000557302 TRIM46Q7Z4K8 759 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 CLYBLQ8N0X4 340 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 GOLGA6L1Q8N7Z2 621 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 C7orf57Q8NEG2 295 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 OR6Y1Q8NGX8 325 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 CHTF18Q8WVB6 975 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 TANKQ92844 425 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 ARL8AQ96BM9 186 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 AGAP4Q96P64 663 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 PHF12Q96QT6 1004 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 ALOXE3Q9BYJ1 711 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 ZNF552Q9H707 407 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-228ENST00000557302 PNO1Q9NRX1 252 aaKnown RBP12.73□□□□□ -0.37
SHMT2-228ENST00000557302 NKIRAS1Q9NYS0 192 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 MCM8Q9UJA3 840 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 CLDN16Q9Y5I7 305 aa12.73□□□□□ -0.37
SHMT2-228ENST00000557302 COL6A6A6NMZ7 2263 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 SAGE2PA6NJ88 616 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 A8MUA0 341 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 TMEM114B3SHH9 223 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 PRKRAO75569 313 aaKnown RBP12.72□□□□□ -0.37
SHMT2-228ENST00000557302 HSPA4LO95757 839 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 IFNA16P05015 189 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 ITGAMP11215 1152 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 GRK2P25098 689 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 SLC18A1P54219 525 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 SLC26A5P58743 744 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 ID2Q02363 134 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 BTKQ06187 659 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 TERF2Q15554 542 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 SH2D4BQ5SQS7 431 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 OR52E8Q6IFG1 317 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 HPS6Q86YV9 775 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 M1APQ8TC57 530 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 MGARPQ8TDB4 240 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 BRIX1Q8TDN6 353 aaKnown RBP12.72□□□□□ -0.37
SHMT2-228ENST00000557302 TM9SF4Q92544 642 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 ANKRD9Q96BM1 317 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-228ENST00000557302 APIPQ96GX9 242 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 ATP6V1G3Q96LB4 118 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 MMP25Q9NPA2 562 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 ADAP2Q9NPF8 381 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 TEX10Q9NXF1 929 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-228ENST00000557302 C5AR2Q9P296 337 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 TRAF6Q9Y4K3 522 aa12.72□□□□□ -0.37
SHMT2-228ENST00000557302 SCN2AQ99250 2005 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 MYOCOSA0A1B0GUC4 107 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 GNG14A0A1W2PPG7 69 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 GLOD5A6NK44 160 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 TMEM233B4DJY2 109 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 SLC28A1O00337 649 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 RGS14O43566 566 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 PCDH7O60245 1069 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 FGF17O60258 216 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 RSL1D1O76021 490 aaKnown RBP12.71□□□□□ -0.37
SHMT2-228ENST00000557302 MYO1DO94832 1006 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 BGNP21810 368 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 TIA1P31483 386 aaKnown RBP eCLIP12.71□□□□□ -0.37
SHMT2-228ENST00000557302 ARRB2P32121 409 aa12.71□□□□□ -0.37
SHMT2-228ENST00000557302 WDR4P57081 412 aaKnown RBP12.71□□□□□ -0.37
SHMT2-228ENST00000557302 ABCE1P61221 599 aaKnown RBP12.71□□□□□ -0.37
SHMT2-228ENST00000557302 TRA2BP62995 288 aaKnown RBP12.71□□□□□ -0.37
SHMT2-228ENST00000557302 IGLV3-21P80748 117 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-228ENST00000557302 FOLH1Q04609 750 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms