RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	HNMT	P50135	292 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	ASCL1	P50553	236 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	MTTP	P55157	894 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	ETF1	P62495	437 aa	Known RBP	11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	TBL3	Q12788	808 aa	Known RBP	11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	SERTAD2	Q14140	314 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	MPEG1	Q2M385	716 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	SPANXN3	Q5MJ09	141 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	TRIM40	Q6P9F5	258 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	PAMR1	Q6UXH9	720 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	SLCO4C1	Q6ZQN7	724 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	SEM1	Q6ZVN7	128 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689		Q71RC1	249 aa	Predicted RBP	11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	GALNT7	Q86SF2	657 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	ULK2	Q8IYT8	1036 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	KRT78	Q8N1N4	520 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	WFDC11	Q8NEX6	87 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	OR2L5	Q8NG80	312 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	KIF18A	Q8NI77	898 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	SLC2A12	Q8TD20	617 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	ZNF592	Q92610	1267 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	KIAA1191	Q96A73	305 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	C18orf12	Q96KH6	178 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	CSF3R	Q99062	836 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	EGFL8	Q99944	293 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	SMR3A	Q99954	134 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	SH3GL2	Q99962	352 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	NT5DC2	Q9H857	520 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	ACKR4	Q9NPB9	350 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	PPAN	Q9NQ55	473 aa	Known RBP	11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	ZNF629	Q9UEG4	869 aa	Predicted RBP	11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	MTRF1L	Q9UGC7	380 aa	Known RBP	11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	IKZF3	Q9UKT9	509 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	CORO1C	Q9ULV4	474 aa	Predicted RBP	11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	BOK	Q9UMX3	212 aa	Predicted RBP	11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	DNAJC13	O75165	2243 aa		11.68	□□□□□ -0.54
SHMT2-223	ENST00000556689	ACAN	P16112	2415 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	TUBAL3	A6NHL2	446 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	WDR47	O94967	919 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	ATE1	O95260	518 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	RFPL3S	P0C7P2	107 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	EPX	P11678	715 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	HOXC12	P31275	282 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	CDKL1	Q00532	357 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	ASPH	Q12797	758 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	PPP1R3A	Q16821	1122 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	ZNF791	Q3KP31	576 aa	Predicted RBP	11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	FBXL19-AS1	Q494R0	122 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	TEDDM1	Q5T9Z0	273 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	FAM45BP	Q6NSW5	357 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	ABHD17C	Q6PCB6	329 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	MAATS1	Q7Z4T9	603 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	PPIL6	Q8IXY8	311 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	SLC35F6	Q8N357	371 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	RELL2	Q8NC24	303 aa	Predicted RBP	11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	C7orf57	Q8NEG2	295 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	NEIL3	Q8TAT5	605 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	FAM45A	Q8TCE6	357 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	ANKRD7	Q92527	254 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	CAPZA3	Q96KX2	299 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	RUNDC3B	Q96NL0	473 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	CAPS2	Q9BXY5	557 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	PITHD1	Q9GZP4	211 aa	Predicted RBP	11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	COPS7B	Q9H9Q2	264 aa	Predicted RBP	11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	SH2D2A	Q9NP31	389 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	ZFP64	Q9NPA5	681 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	COPS7A	Q9UBW8	275 aa		11.67	□□□□□ -0.54
SHMT2-223	ENST00000556689	AKAP6	Q13023	2319 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	CDC7	O00311	574 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	LDB3	O75112	727 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	ETHE1	O95571	254 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	EPPIN	O95925	133 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	IL2RA	P01589	272 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	INHBB	P09529	407 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	TCP1	P17987	556 aa	Known RBP	11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	TACR1	P25103	407 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	CERS1	P27544	350 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	CEACAM8	P31997	349 aa	Predicted RBP	11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	TIMP3	P35625	211 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	GDF5	P43026	501 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	KCNJ2	P63252	427 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	TGM3	Q08188	693 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	SLBP	Q14493	270 aa	Known RBP eCLIP	11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	ADPRM	Q3LIE5	342 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	CCDC137	Q6PK04	289 aa	Known RBP	11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	CLEC9A	Q6UXN8	241 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	SYT10	Q6XYQ8	523 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	TAOK1	Q7L7X3	1001 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	KIF18B	Q86Y91	864 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	LIX1	Q8N485	282 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	NKAP	Q8N5F7	415 aa	Known RBP	11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	SLC15A4	Q8N697	577 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	TNIP2	Q8NFZ5	429 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	SLC22A8	Q8TCC7	542 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	PAQR8	Q8TEZ7	354 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	ZNF721	Q8TF20	911 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	CERS2	Q96G23	380 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	SENP5	Q96HI0	755 aa	Predicted RBP	11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	NAP1L3	Q99457	506 aa	Predicted RBP	11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	NAT9	Q9BTE0	207 aa		11.66	□□□□□ -0.54

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