RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 ZNF274Q96GC6 653 aaPredicted RBP3.54□□□□□ -1.84
SCFD1-221ENST00000556534 CDKN2AIPNLQ96HQ2 116 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 ERGIC2Q96RQ1 377 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 KRTAP4-4Q9BYR3 166 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 LIPT1Q9Y234 373 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 SNX5Q9Y5X3 404 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 KIAA1217Q5T5P2 1943 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 A0A1B0GTH9 108 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 ATP6AP2A0A1C7CYW4 349 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 BCLAF3A2AJT9 711 aaKnown RBP3.53□□□□□ -1.84
SCFD1-221ENST00000556534 ZNF840PA6NDX5 716 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 CHUKO15111 745 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 SYT7O43581 403 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 CSDE1O75534 798 aaKnown RBP3.53□□□□□ -1.84
SCFD1-221ENST00000556534 MELTFP08582 738 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 GP9P14770 177 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 ATP5DP30049 168 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 SLC1A6P48664 564 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 CCR4P51679 360 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 ASIC1P78348 528 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 C17orf67Q0P5P2 114 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 FASTKQ14296 549 aaKnown RBP3.53□□□□□ -1.84
SCFD1-221ENST00000556534 NFE2L1Q14494 772 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 AGAP7PQ5VUJ5 663 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 EMBQ6PCB8 327 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 ZNF730Q6ZMV8 503 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 CYP4V2Q6ZWL3 525 aaPredicted RBP3.53□□□□□ -1.84
SCFD1-221ENST00000556534 TMUB2Q71RG4 321 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 PIWIL3Q7Z3Z3 882 aaKnown RBP3.53□□□□□ -1.84
SCFD1-221ENST00000556534 CCDC83Q8IWF9 413 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 SYCP3Q8IZU3 236 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 FBXL16Q8N461 479 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 NAT8LQ8N9F0 302 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 CLEC1AQ8NC01 280 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 SPATA18Q8TC71 538 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 AP2M1Q96CW1 435 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 RUNDC3BQ96NL0 473 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 RBM24Q9BX46 236 aaKnown RBP3.53□□□□□ -1.84
SCFD1-221ENST00000556534 NUSAP1Q9BXS6 441 aaKnown RBP3.53□□□□□ -1.84
SCFD1-221ENST00000556534 ZDHHC6Q9H6R6 413 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 MARCH7Q9H992 704 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 COPS7BQ9H9Q2 264 aaPredicted RBP3.53□□□□□ -1.84
SCFD1-221ENST00000556534 PNPLA3Q9NST1 481 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 ABCB8Q9NUT2 735 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 CNIH4Q9P003 139 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 ZNF581Q9P0T4 197 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 PSORS1C1Q9UIG5 152 aa3.53□□□□□ -1.84
SCFD1-221ENST00000556534 A0A087WWV3 80 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 A0A0U1RQK1 487 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 ZNF320A2RRD8 509 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 FAM149AA5PLN7 773 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 SH3BGRLO75368 114 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 GOSR1O95249 250 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 LYNP07948 512 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 FHP07954 510 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 HSP90AB1P08238 724 aaKnown RBP3.52□□□□□ -1.85
SCFD1-221ENST00000556534 ANPEPP15144 967 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 GLRA1P23415 457 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 YWHAHQ04917 246 aaPredicted RBP3.52□□□□□ -1.85
SCFD1-221ENST00000556534 MEF2DQ14814 521 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 PCK2Q16822 640 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 TMEM44Q2T9K0 475 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 KBTBD12Q3ZCT8 623 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 ZNF506Q5JVG8 444 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 CAPN13Q6MZZ7 669 aaPredicted RBP3.52□□□□□ -1.85
SCFD1-221ENST00000556534 C11orf88Q6PI97 169 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 ASPGQ86U10 573 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 CCDC170Q8IYT3 715 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 TYMSOSQ8TAI1 123 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 ITLN1Q8WWA0 313 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 GGHQ92820 318 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 EPSTI1Q96J88 318 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 SSX3Q99909 188 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 CACNG6Q9BXT2 260 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 MRPL9Q9BYD2 267 aaKnown RBP3.52□□□□□ -1.85
SCFD1-221ENST00000556534 RNPEPL1Q9HAU8 725 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 FAM120CQ9NX05 1096 aaKnown RBP3.52□□□□□ -1.85
SCFD1-221ENST00000556534 GPR83Q9NYM4 423 aa3.52□□□□□ -1.85
SCFD1-221ENST00000556534 A0A0A6YYC8 382 aaPredicted RBP3.51□□□□□ -1.85
SCFD1-221ENST00000556534 C13orf42A0A1B0GVH6 325 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 TRIM64A6NGJ6 449 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 TRIM64BA6NI03 449 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 I3L1I5 382 aaPredicted RBP3.51□□□□□ -1.85
SCFD1-221ENST00000556534 CCSO14618 274 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 FMO6PO60774 539 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 VENTXO95231 258 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 MT-ND1P03886 318 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 ATP6V1B1P15313 513 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 TCF7P36402 384 aaPredicted RBP3.51□□□□□ -1.85
SCFD1-221ENST00000556534 TNFSF10P50591 281 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 SNU13P55769 128 aaKnown RBP3.51□□□□□ -1.85
SCFD1-221ENST00000556534 SLC34A1Q06495 639 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 CYLC2Q14093 348 aaPredicted RBP3.51□□□□□ -1.85
SCFD1-221ENST00000556534 SLMAPQ14BN4 828 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 SPHARQ15513 63 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 RNLSQ5VYX0 342 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 LRRC49Q8IUZ0 686 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 WDR49Q8IV35 697 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 CLYBLQ8N0X4 340 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 CCDC197Q8NCU1 140 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms