RNA–Protein interactions for RNA: ENST00000554659.5

VTI1B-204, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VTI1B, Length 5,351 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-204ENST00000554659 CKMT1AP12532 417 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 PORP16435 677 aaPredicted RBP13.4□□□□□ -0.26
VTI1B-204ENST00000554659 RCAN2Q14206 197 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 SPHARQ15513 63 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 OR4D1Q15615 310 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 MTFR2Q6P444 385 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 SLC29A4Q7RTT9 530 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 NRSN1Q8IZ57 195 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 ELMOD2Q8IZ81 293 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.4□□□□□ -0.26
VTI1B-204ENST00000554659 C14orf119Q9NWQ9 140 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 SRRDQ9UH36 339 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 NPIPA1Q9UND3 350 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 STUB1Q9UNE7 303 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 CLCA1A8K7I4 914 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 PRKYO43930 277 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 T-ENOLP0DO92 83 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 MLLT3P42568 568 aaPredicted RBP13.4□□□□□ -0.26
VTI1B-204ENST00000554659 TUBB3Q13509 450 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.4□□□□□ -0.264e-11■■■□□ 14.9
VTI1B-204ENST00000554659 TRAM1L1Q8N609 369 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 ZNF565Q8N9K5 539 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 SNIP1Q8TAD8 396 aaKnown RBP13.4□□□□□ -0.26
VTI1B-204ENST00000554659 TSNAXQ99598 290 aaKnown RBP13.4□□□□□ -0.26
VTI1B-204ENST00000554659 DNAJC5Q9H3Z4 198 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 SEC61A2Q9H9S3 476 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 TMEM184CQ9NVA4 438 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 EDARQ9UNE0 448 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 ANXA3P12429 323 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 MECP2P51608 486 aaKnown RBP13.4□□□□□ -0.26
VTI1B-204ENST00000554659 SPRED3Q2MJR0 410 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 SLC36A3Q495N2 470 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 CCBE1Q6UXH8 406 aaPredicted RBP13.4□□□□□ -0.26
VTI1B-204ENST00000554659 TSPYL5Q86VY4 417 aaPredicted RBP13.4□□□□□ -0.26
VTI1B-204ENST00000554659 Q8N402 240 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 AUTS2Q8WXX7 1259 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 IGSF8Q969P0 613 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 TMEM246Q9BRR3 403 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 PCDH10Q9P2E7 1040 aa13.4□□□□□ -0.26
VTI1B-204ENST00000554659 COL14A1Q05707 1796 aaKnown RBP13.4□□□□□ -0.26
VTI1B-204ENST00000554659 ZCWPW2A0A1B0GU75 182 aa13.4□□□□□ -0.27
VTI1B-204ENST00000554659 CYP17A1P05093 508 aa13.4□□□□□ -0.27
VTI1B-204ENST00000554659 GJA1P17302 382 aa13.4□□□□□ -0.27
VTI1B-204ENST00000554659 PPP5CP53041 499 aa13.4□□□□□ -0.27
VTI1B-204ENST00000554659 SH3BP2P78314 561 aa13.4□□□□□ -0.27
VTI1B-204ENST00000554659 PMS2P3Q13401 168 aa13.4□□□□□ -0.27
VTI1B-204ENST00000554659 Q6ZVL8 140 aa13.4□□□□□ -0.27
VTI1B-204ENST00000554659 OR8S1Q8NH09 359 aa13.4□□□□□ -0.27
VTI1B-204ENST00000554659 C17orf62Q9BQA9 187 aa13.4□□□□□ -0.27
VTI1B-204ENST00000554659 RNF121Q9H920 327 aa13.4□□□□□ -0.27
VTI1B-204ENST00000554659 UBQLN2Q9UHD9 624 aa13.4□□□□□ -0.27
VTI1B-204ENST00000554659 LAMP5Q9UJQ1 280 aa13.4□□□□□ -0.27
VTI1B-204ENST00000554659 PLAGL1Q9UM63 463 aa13.4□□□□□ -0.27
VTI1B-204ENST00000554659 PCDHGA2Q9Y5H1 932 aa13.4□□□□□ -0.27
VTI1B-204ENST00000554659 ZNF701M0R085 212 aaPredicted RBP13.39□□□□□ -0.27
VTI1B-204ENST00000554659 NME4O00746 187 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 GRID2O43424 1007 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 SSX5O60225 188 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 TNFP01375 233 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 STATHP02808 62 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 STSP08842 583 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 CNKSR3Q6P9H4 555 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 ENPP6Q6UWR7 440 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 PLEKHG7Q6ZR37 379 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 SPATC1Q76KD6 591 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 CEP68Q76N32 757 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 PRSS48Q7RTY5 328 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 NRROSQ86YC3 692 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 GALNT11Q8NCW6 608 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 C7orf34Q96L11 122 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 ACTR6Q9GZN1 396 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 ACSL5Q9ULC5 683 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 KCNIP3Q9Y2W7 256 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 MYH2Q9UKX2 1941 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 A0A1W2PQ45 241 aaPredicted RBP13.39□□□□□ -0.27
VTI1B-204ENST00000554659 A0A1W2PQY0 241 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 TRIM64A6NGJ6 449 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 BOLA2-SMG1P6H3BVE0 249 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 LEFTY2O00292 366 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 VILLO15195 856 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 COCHO43405 550 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 GSRP00390 522 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 CYP27C1Q4G0S4 372 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 SLC35F1Q5T1Q4 408 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 GTF2IRD2BQ6EKJ0 949 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 PSAPL1Q6NUJ1 521 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 GPRIN1Q7Z2K8 1008 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 GTF2IRD2Q86UP8 949 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 RBM12BQ8IXT5 1001 aaKnown RBP13.39□□□□□ -0.27
VTI1B-204ENST00000554659 DPYSL5Q9BPU6 564 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 FAIMQ9NVQ4 179 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 LIPT1Q9Y234 373 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 A0A1B0GVT2 93 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 RFPL2O75678 378 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 ARHGEF15O94989 841 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 PUS10Q3MIT2 529 aaKnown RBP13.39□□□□□ -0.27
VTI1B-204ENST00000554659 ZNF776Q68DI1 518 aaPredicted RBP13.39□□□□□ -0.27
VTI1B-204ENST00000554659 EGFL6Q8IUX8 553 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 KDM1BQ8NB78 822 aa13.39□□□□□ -0.27
VTI1B-204ENST00000554659 NAXEQ8NCW5 288 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms