RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 OR10G6Q8NH81 332 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 SLC37A2Q8TED4 501 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 PATE1Q8WXA2 126 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 UCN3Q969E3 161 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 RMND5BQ96G75 393 aaPredicted RBP24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 TPD52L3Q96J77 140 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 C7orf34Q96L11 122 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 TRAPPC9Q96Q05 1148 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 TMEM121BQ9BXQ6 578 aaPredicted RBP24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 ROGDIQ9GZN7 287 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 CXorf56Q9H5V9 222 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 PADI2Q9Y2J8 665 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 CLPTM1O96005 669 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 CELA2BP08218 269 aaPredicted RBP24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 MAGP20916 626 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 CD27P26842 260 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 AQP1P29972 269 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 CDK9P50750 372 aaKnown RBP24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 ITGA1P56199 1179 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 PCBP3P57721 371 aaKnown RBP24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 SPDYE7PQ495Y7 208 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 TMEM26Q6ZUK4 368 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 ZC3H7AQ8IWR0 971 aaKnown RBP24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 FAM160A2Q8N612 972 aaPredicted RBP24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 NRBF2Q96F24 287 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 FBXL20Q96IG2 436 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 AMDHD1Q96NU7 426 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 OR2A5Q96R48 311 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 GLIPR2Q9H4G4 154 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 SMURF2Q9HAU4 748 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 A4GALTQ9NPC4 353 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 VNN3Q9NY84 501 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 ATG4BQ9Y4P1 393 aa24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 SNRNP200O75643 2136 aaKnown RBP24.95■■□□□ 1.58
CCDC88C-205ENST00000553403 METTL12A8MUP2 240 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 hCG_2039718K7EN88 272 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 NDUFS2O75306 463 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 SLC35G6P0C7Q6 338 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 CERS1P27544 350 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 DNAJA1P31689 397 aaKnown RBP24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 MAGEA8P43361 318 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 RPL5P46777 297 aaKnown RBP24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 ARHGDIAP52565 204 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 RAB8AP61006 207 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 RFX4Q33E94 735 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 KCTD21Q4G0X4 260 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 IQCCQ4KMZ1 466 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 RNF220Q5VTB9 566 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 C6orf120Q7Z4R8 191 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 LZICQ8WZA0 190 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 CLK4Q9HAZ1 481 aaKnown RBP24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 PILRAQ9UKJ1 303 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 MYO1GB0I1T2 1018 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 MAP3K13O43283 966 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 AIFM1O95831 613 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 FPR1P21462 350 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 LIN52Q52LA3 116 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 TTC23Q5W5X9 447 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 CEACAM20Q6UY09 585 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 HS3ST5Q8IZT8 346 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 TAMM41Q96BW9 452 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 BBS4Q96RK4 519 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 FBXW2Q9UKT8 454 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 CES1P1Q9UKY3 287 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 SNX11Q9Y5W9 270 aa24.94■■□□□ 1.58
CCDC88C-205ENST00000553403 URADA6NGE7 173 aa24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 VGLL3A8MV65 326 aa24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 VILLO15195 856 aa24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 SMIM10L1P0DMW3 83 aa24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 CCT3P49368 545 aaKnown RBP24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 BTN3A2P78410 334 aa24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 IFI44LQ53G44 452 aa24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 TTC33Q6PID6 262 aaPredicted RBP24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 ISLR2Q6UXK2 745 aa24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 TMEM64Q6YI46 380 aa24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 HORMAD2Q8N7B1 307 aa24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 ARL10Q8N8L6 244 aa24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 CADM4Q8NFZ8 388 aa24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 UTP15Q8TED0 518 aaKnown RBP24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 SMIM10Q96HG1 83 aa24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 YTHDF1Q9BYJ9 559 aaKnown RBP24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 TOR3AQ9H497 397 aa24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 THUMPD1Q9NXG2 353 aaKnown RBP24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 FBXL21Q9UKT6 434 aa24.93■■□□□ 1.58
CCDC88C-205ENST00000553403 M0QX08 132 aa24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 PROM1O43490 865 aa24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 CTSVO60911 334 aa24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 JUNDP17535 347 aa24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 ZIK1Q3SY52 487 aaPredicted RBP24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 REEP3Q6NUK4 255 aa24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 SLC48A1Q6P1K1 146 aa24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 KCT2Q8NC54 265 aa24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 CAMKVQ8NCB2 501 aa24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 TSPAN14Q8NG11 270 aa24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 FCRL4Q96PJ5 515 aa24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 FOXQ1Q9C009 403 aa24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 NDUFA13Q9P0J0 144 aa24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 C3orf18Q9UK00 162 aa24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 ENTPD4Q9Y227 616 aa24.92■■□□□ 1.58
CCDC88C-205ENST00000553403 SLCO1B1Q9Y6L6 691 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms