RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 SLAMF1Q13291 335 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 ART3Q13508 389 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 GTF2H2Q13888 395 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 PCBP2Q15366 365 aaKnown RBP eCLIP15.18■□□□□ 0.02
VPS29-207ENST00000549970 TECRLQ5HYJ1 363 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 LIPJQ5W064 366 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 SP5Q6BEB4 398 aaPredicted RBP15.18■□□□□ 0.02
VPS29-207ENST00000549970 GTF2H2CQ6P1K8 395 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 RPTNQ6XPR3 784 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 Q6ZPB1 254 aaPredicted RBP15.18■□□□□ 0.02
VPS29-207ENST00000549970 GOLGA7Q7Z5G4 137 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 RELL1Q8IUW5 271 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 OR4N5Q8IXE1 308 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 SLC34A3Q8N130 599 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 PLD6Q8N2A8 252 aaKnown RBP15.18■□□□□ 0.02
VPS29-207ENST00000549970 MMGT1Q8N4V1 131 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 ZNF808Q8N4W9 903 aaPredicted RBP15.18■□□□□ 0.02
VPS29-207ENST00000549970 POGLUT1Q8NBL1 392 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 SLC2A12Q8TD20 617 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 ASB15Q8WXK1 588 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 IFT81Q8WYA0 676 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 MARVELD3Q96A59 401 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 RGMAQ96B86 450 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 ANKRD9Q96BM1 317 aaPredicted RBP15.18■□□□□ 0.02
VPS29-207ENST00000549970 FMO2Q99518 471 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 CENPKQ9BS16 269 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 TIMMDC1Q9NPL8 285 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 ZNF358Q9NW07 568 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 HPF1Q9NWY4 346 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 MYOTQ9UBF9 498 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 PCDHGA11Q9Y5H2 935 aa15.18■□□□□ 0.02
VPS29-207ENST00000549970 PLPP1O14494 284 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 HNRNPRO43390 633 aaKnown RBP15.17■□□□□ 0.02
VPS29-207ENST00000549970 HS6ST1O60243 411 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 FGF17O60258 216 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 OR6B1O95007 311 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 GRNP28799 593 aaKnown RBP15.17■□□□□ 0.02
VPS29-207ENST00000549970 PTGER1P34995 402 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 ARL1P40616 181 aaPredicted RBP15.17■□□□□ 0.02
VPS29-207ENST00000549970 PIK3CBP42338 1070 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 PHEXP78562 749 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 ADORA2A-AS1P86434 159 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 CPSF6Q16630 551 aaKnown RBP eCLIP15.17■□□□□ 0.02
VPS29-207ENST00000549970 IL20RBQ6UXL0 311 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 PTGR2Q8N8N7 351 aaPredicted RBP15.17■□□□□ 0.02
VPS29-207ENST00000549970 PSD4Q8NDX1 1056 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 SLC44A1Q8WWI5 657 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 RASL10BQ96S79 203 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 PAFAH2Q99487 392 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 IPPKQ9H8X2 491 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 RNF11Q9Y3C5 154 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 TNPO3Q9Y5L0 923 aaKnown RBP15.17■□□□□ 0.02
VPS29-207ENST00000549970 IKBKGQ9Y6K9 419 aa15.17■□□□□ 0.02
VPS29-207ENST00000549970 H0YIV9 168 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 CDC40O60508 579 aaKnown RBP eCLIP15.16■□□□□ 0.02
VPS29-207ENST00000549970 UGDHO60701 494 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 PRKRAO75569 313 aaKnown RBP15.16■□□□□ 0.02
VPS29-207ENST00000549970 ETHE1O95571 254 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 TUBB4AP04350 444 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 SOX3P41225 446 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 PIK3CGP48736 1102 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 HK2P52789 917 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 HNRNPH2P55795 449 aaKnown RBP15.16■□□□□ 0.02
VPS29-207ENST00000549970 TNFRSF17Q02223 184 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 C18orf63Q68DL7 685 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 BNC2Q6ZN30 1099 aaPredicted RBP15.16■□□□□ 0.02
VPS29-207ENST00000549970 NCCRP1Q6ZVX7 275 aaPredicted RBP15.16■□□□□ 0.02
VPS29-207ENST00000549970 GPR180Q86V85 440 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 CHERPQ8IWX8 916 aaKnown RBP15.16■□□□□ 0.02
VPS29-207ENST00000549970 GPALPP1Q8IXQ4 340 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 ZCCHC7Q8N3Z6 543 aaKnown RBP15.16■□□□□ 0.02
VPS29-207ENST00000549970 MNS1Q8NEH6 495 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 UHMK1Q8TAS1 419 aaKnown RBP15.16■□□□□ 0.02
VPS29-207ENST00000549970 AGAP11Q8TF27 550 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 REPS1Q96D71 796 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 PHF21BQ96EK2 531 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 SCYL1Q96KG9 808 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 DGAT2Q96PD7 388 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 CDK15Q96Q40 435 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 FUT8Q9BYC5 575 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 RPF2Q9H7B2 306 aaKnown RBP15.16■□□□□ 0.02
VPS29-207ENST00000549970 DEPPQ9NTK1 212 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 MS4A12Q9NXJ0 267 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 COPS7AQ9UBW8 275 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 PHF11Q9UIL8 331 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 MEMO1Q9Y316 297 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 TSC22D4Q9Y3Q8 395 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 ATG4BQ9Y4P1 393 aa15.16■□□□□ 0.02
VPS29-207ENST00000549970 KLF2Q9Y5W3 355 aaPredicted RBP15.16■□□□□ 0.02
VPS29-207ENST00000549970 NCOA6Q14686 2063 aaPredicted RBP15.15■□□□□ 0.02
VPS29-207ENST00000549970 POC1B-GALNT4F8VUJ3 575 aa15.15■□□□□ 0.02
VPS29-207ENST00000549970 PRRG2O14669 202 aa15.15■□□□□ 0.02
VPS29-207ENST00000549970 CTAGE8P0CG41 777 aa15.15■□□□□ 0.02
VPS29-207ENST00000549970 COX7A2P14406 83 aa15.15■□□□□ 0.02
VPS29-207ENST00000549970 PTX3P26022 381 aaPredicted RBP15.15■□□□□ 0.02
VPS29-207ENST00000549970 HTR1EP28566 365 aa15.15■□□□□ 0.02
VPS29-207ENST00000549970 ECHS1P30084 290 aa15.15■□□□□ 0.02
VPS29-207ENST00000549970 MAGEA12P43365 314 aa15.15■□□□□ 0.02
VPS29-207ENST00000549970 NEK2P51955 445 aa15.15■□□□□ 0.02
VPS29-207ENST00000549970 RNF4P78317 190 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms