RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SPRR3Q9UBC9 169 aa15.61■□□□□ 0.09
VPS29-204ENST00000548259 SLC22A14Q9Y267 594 aa15.61■□□□□ 0.09
VPS29-204ENST00000548259 A0A0G2JN53 185 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 LRIT2A6NDA9 550 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 C17orf105B2RV13 164 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 TGFBR3LH3BV60 316 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 TTC4O95801 387 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 C1GALT1C1LP0DN25 315 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 PIGAP37287 484 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 HNMTP50135 292 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 PLA2G16P53816 162 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 TIAL1Q01085 375 aaKnown RBP eCLIP15.6■□□□□ 0.09
VPS29-204ENST00000548259 PIGGQ5H8A4 983 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 P3H2Q8IVL5 708 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.6■□□□□ 0.09
VPS29-204ENST00000548259 SLC15A4Q8N697 577 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 LRRN4CLQ8ND94 238 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 OR2L5Q8NG80 312 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 SLC2A12Q8TD20 617 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 PTPMT1Q8WUK0 201 aaPredicted RBP15.6■□□□□ 0.09
VPS29-204ENST00000548259 ARSGQ96EG1 525 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 EGFL8Q99944 293 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 CAPS2Q9BXY5 557 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 ROGDIQ9GZN7 287 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 PITHD1Q9GZP4 211 aaPredicted RBP15.6■□□□□ 0.09
VPS29-204ENST00000548259 REXO4Q9GZR2 422 aaKnown RBP15.6■□□□□ 0.09
VPS29-204ENST00000548259 CORO1CQ9ULV4 474 aaPredicted RBP15.6■□□□□ 0.09
VPS29-204ENST00000548259 CLDN16Q9Y5I7 305 aa15.6■□□□□ 0.09
VPS29-204ENST00000548259 C15orf38-AP3S2A0A0A6YYH1 394 aa15.59■□□□□ 0.09
VPS29-204ENST00000548259 CLCA1A8K7I4 914 aa15.59■□□□□ 0.09
VPS29-204ENST00000548259 C4orf51C9J302 202 aa15.59■□□□□ 0.09
VPS29-204ENST00000548259 CLEC3AO75596 197 aa15.59■□□□□ 0.09
VPS29-204ENST00000548259 CCDC175P0C221 793 aa15.59■□□□□ 0.09
VPS29-204ENST00000548259 PGAM1P18669 254 aa15.59■□□□□ 0.09
VPS29-204ENST00000548259 ENDOUP21128 410 aaKnown RBP15.59■□□□□ 0.09
VPS29-204ENST00000548259 CEACAM8P31997 349 aaPredicted RBP15.59■□□□□ 0.09
VPS29-204ENST00000548259 RPL21P46778 160 aaKnown RBP15.59■□□□□ 0.09
VPS29-204ENST00000548259 HNRNPFP52597 415 aaKnown RBP15.59■□□□□ 0.09
VPS29-204ENST00000548259 ASPHQ12797 758 aa15.59■□□□□ 0.09
VPS29-204ENST00000548259 ACSF3Q4G176 576 aaPredicted RBP15.59■□□□□ 0.09
VPS29-204ENST00000548259 LRRC25Q8N386 305 aaPredicted RBP15.59■□□□□ 0.09
VPS29-204ENST00000548259 TMEM52Q8NDY8 209 aa15.59■□□□□ 0.09
VPS29-204ENST00000548259 NUBPLQ8TB37 319 aa15.59■□□□□ 0.09
VPS29-204ENST00000548259 CAPZA3Q96KX2 299 aa15.59■□□□□ 0.09
VPS29-204ENST00000548259 ART5Q96L15 291 aa15.59■□□□□ 0.09
VPS29-204ENST00000548259 JSRP1Q96MG2 331 aaPredicted RBP15.59■□□□□ 0.09
VPS29-204ENST00000548259 REPIN1Q9BWE0 567 aaKnown RBP15.59■□□□□ 0.09
VPS29-204ENST00000548259 PLEKHF2Q9H8W4 249 aa15.59■□□□□ 0.09
VPS29-204ENST00000548259 PRM3Q9NNZ6 103 aa15.59■□□□□ 0.09
VPS29-204ENST00000548259 DAPP1Q9UN19 280 aa15.59■□□□□ 0.09
VPS29-204ENST00000548259 CTAGE15A4D2H0 777 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 EEF1E1-BLOC1S5C9J1V9 151 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 CYR61O00622 381 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 EEF1E1O43324 174 aaKnown RBP15.58■□□□□ 0.08
VPS29-204ENST00000548259 SERPINB3P29508 390 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 HNRNPH1P31943 449 aaKnown RBP15.58■□□□□ 0.08
VPS29-204ENST00000548259 OPRM1P35372 400 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 MAGEA3P43357 314 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 LIM2P55344 173 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 PPP2R2BQ00005 443 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 BIKQ13323 160 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 SLBPQ14493 270 aaKnown RBP eCLIP15.58■□□□□ 0.08
VPS29-204ENST00000548259 CRYMQ14894 314 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 RBM20Q5T481 1227 aaKnown RBP15.58■□□□□ 0.08
VPS29-204ENST00000548259 FAM45BPQ6NSW5 357 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 FRA10AC1Q70Z53 315 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 CTAGE6Q86UF2 777 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 SRFBP1Q8NEF9 429 aaKnown RBP15.58■□□□□ 0.08
VPS29-204ENST00000548259 TNIP2Q8NFZ5 429 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 FAM45AQ8TCE6 357 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 PAQR8Q8TEZ7 354 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 SPACA9Q96E40 222 aaPredicted RBP15.58■□□□□ 0.08
VPS29-204ENST00000548259 PDLIM5Q96HC4 596 aaKnown RBP15.58■□□□□ 0.08
VPS29-204ENST00000548259 NAT9Q9BTE0 207 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 SLC6A15Q9H2J7 730 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 NT5DC2Q9H857 520 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 SEMA4BQ9NPR2 832 aaPredicted RBP15.58■□□□□ 0.08
VPS29-204ENST00000548259 VWA7Q9Y334 891 aa15.58■□□□□ 0.08
VPS29-204ENST00000548259 CASKO14936 926 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 WDR47O94967 919 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 AHSGP02765 367 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 MSH2P43246 934 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 KCNC1P48547 511 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 TRPC1P48995 793 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 CDKL1Q00532 357 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 ZNF791Q3KP31 576 aaPredicted RBP15.57■□□□□ 0.08
VPS29-204ENST00000548259 TBCELQ5QJ74 424 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 PRAMEF20Q5VT98 475 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 SEM1Q6ZVN7 128 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 GALNT7Q86SF2 657 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 FAM13CQ8NE31 585 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 SPATA3Q8NHX4 192 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 ANKRD7Q92527 254 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 SIGLEC10Q96LC7 697 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 QRFPRQ96P65 431 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 KCNC2Q96PR1 638 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 DOHHQ9BU89 302 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 AICDAQ9GZX7 198 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 LYRM4Q9HD34 91 aa15.57■□□□□ 0.08
VPS29-204ENST00000548259 PPANQ9NQ55 473 aaKnown RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms