RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	CAPS2	Q9BXY5	557 aa		7.22	□□□□□ -1.25
SNHG1-223	ENST00000545440	UNK	Q9C0B0	810 aa	Known RBP	7.22	□□□□□ -1.25
SNHG1-223	ENST00000545440	RNF32	Q9H0A6	362 aa		7.22	□□□□□ -1.25
SNHG1-223	ENST00000545440	LANCL2	Q9NS86	450 aa		7.22	□□□□□ -1.25
SNHG1-223	ENST00000545440	NUDT4	Q9NZJ9	180 aa		7.22	□□□□□ -1.25
SNHG1-223	ENST00000545440	CSAG2	Q9Y5P2	127 aa		7.22	□□□□□ -1.25
SNHG1-223	ENST00000545440	DOPEY1	Q5JWR5	2465 aa		7.22	□□□□□ -1.25
SNHG1-223	ENST00000545440	DYTN	A2CJ06	578 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	CTAGE15	A4D2H0	777 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	NCF1B	A6NI72	391 aa	Predicted RBP	7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	NCF1C	A8MVU1	366 aa	Predicted RBP	7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	MAGEB17	A8MXT2	336 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	KIF2A	O00139	706 aa	Predicted RBP	7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	TAPBP	O15533	448 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	KERA	O60938	352 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	STK16	O75716	305 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	URI1	O94763	535 aa	Predicted RBP	7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	S100B	P04271	92 aa	Predicted RBP	7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	SERPIND1	P05546	499 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	FH	P07954	510 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	C1GALT1C1L	P0DN25	315 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	NCF1	P14598	390 aa	Predicted RBP	7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	CRABP2	P29373	138 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	PHB	P35232	272 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	GDF5	P43026	501 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	CORO7	P57737	925 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	STXBP1	P61764	594 aa	Known RBP	7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	ARG2	P78540	354 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	RHAG	Q02094	409 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	SRSF1	Q07955	248 aa	Known RBP eCLIP	7.21	□□□□□ -1.26	5e-12	■■□□□ 12.5
SNHG1-223	ENST00000545440	LSAMP	Q13449	338 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	E2F2	Q14209	437 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	ABRAXAS2	Q15018	415 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	EFTUD2	Q15029	972 aa	Known RBP eCLIP	7.21	□□□□□ -1.26	5e-23	■■■■■ 44.5
SNHG1-223	ENST00000545440	TESK1	Q15569	626 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	OR4D1	Q15615	310 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	EXT1	Q16394	746 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	PDK4	Q16654	411 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	C18orf21	Q32NC0	220 aa	Predicted RBP	7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	TMIGD1	Q6UXZ0	262 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	QSOX2	Q6ZRP7	698 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	LINC00696	Q6ZRV3	163 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	RAPH1	Q70E73	1250 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	ANKRD37	Q7Z713	158 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	CMC1	Q7Z7K0	106 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	CTAGE6	Q86UF2	777 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	KRT78	Q8N1N4	520 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	SPATA6L	Q8N4H0	392 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	MMGT1	Q8N4V1	131 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	SIRT6	Q8N6T7	355 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	PLPP5	Q8NEB5	264 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	MNS1	Q8NEH6	495 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	OR5T3	Q8NGG3	340 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	DNAJB14	Q8TBM8	379 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	STAG3L4	Q8TBR4	150 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	CREB3L4	Q8TEY5	395 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	UBTD2	Q8WUN7	234 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	WDR34	Q96EX3	536 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	CNDP1	Q96KN2	507 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	CYTH2	Q99418	400 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	EFCAB11	Q9BUY7	163 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	FUT8	Q9BYC5	575 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	TSPYL1	Q9H0U9	437 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	NT5DC2	Q9H857	520 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	NMRAL1	Q9HBL8	299 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	AGPAT4	Q9NRZ5	378 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	DNAJC11	Q9NVH1	559 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	ASF1B	Q9NVP2	202 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	PTGFRN	Q9P2B2	879 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	MTRF1L	Q9UGC7	380 aa	Known RBP	7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	TEKT2	Q9UIF3	430 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	CACNA1C	Q13936	2221 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	NCOA6	Q14686	2063 aa	Predicted RBP	7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	PCNX1	Q96RV3	2341 aa		7.21	□□□□□ -1.26
SNHG1-223	ENST00000545440	DNAJC13	O75165	2243 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	COL12A1	Q99715	3063 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440		A0A087X1B8	175 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440		A0A088AWK7	358 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	IGKV3D-11	A0A0A0MRZ8	115 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	TRAV17	A0A0B4J275	112 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	SYCE1L	A8MT33	242 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	C4orf51	C9J302	202 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	FAM47E-STBD1	D6RA91	191 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	CLGN	O14967	610 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	CHST10	O43529	356 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	H2AFY	O75367	372 aa	Known RBP	7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	CDC123	O75794	336 aa	Predicted RBP	7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	FAM155B	O75949	473 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	SEC24D	O94855	1032 aa	Predicted RBP	7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	UQCRH	P07919	91 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	CELA2A	P08217	269 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	LTA4H	P09960	611 aa	Known RBP	7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	CTAGE8	P0CG41	777 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	SMIM10L1	P0DMW3	83 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	ITGAM	P11215	1152 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	RNH1	P13489	461 aa	Known RBP	7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	TFEB	P19484	476 aa		7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	ZNF10	P21506	573 aa	Predicted RBP	7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	HNRNPH1	P31943	449 aa	Known RBP	7.2	□□□□□ -1.26
SNHG1-223	ENST00000545440	HSPA7	P48741	367 aa		7.2	□□□□□ -1.26

Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms