RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 GATA5Q9BWX5 397 aaPredicted RBP8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 TSPAN10Q9H1Z9 355 aaPredicted RBP8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 SLC26A1Q9H2B4 701 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 CLK4Q9HAZ1 481 aaKnown RBP8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 KCNK9Q9NPC2 374 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 ZNF446Q9NWS9 450 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 ABI3Q9P2A4 366 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 ZNF282Q9UDV7 671 aaPredicted RBP8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 ZNF225Q9UK10 706 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 RNF11Q9Y3C5 154 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 POLQO75417 2590 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 PKDREJQ9NTG1 2253 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 A0A1B0GTL3 188 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 LRIT2A6NDA9 550 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 VSTM2BA6NLU5 285 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 H0YIG0 161 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 FOXE1O00358 373 aaPredicted RBP8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 FFAR3O14843 346 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 GPR42O15529 346 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 FOXS1O43638 330 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 WISP2O76076 250 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 SERPIND1P05546 499 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 ENO1P06733 434 aaKnown RBP8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 PCNAP12004 261 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 COX6A1P12074 109 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 CD1EP15812 388 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 ALOX12P18054 663 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 TSPAN8P19075 237 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 FBLP22087 321 aaKnown RBP8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 SOX11P35716 441 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 ARL1P40616 181 aaPredicted RBP8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 ARFIP1P53367 373 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 EMP2P54851 167 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 ZNF33BQ06732 778 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 TMEM35AQ53FP2 167 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 TTMPQ5BVD1 217 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 ABHD17BQ5VST6 288 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 FRG2Q64ET8 278 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 GPRIN3Q6ZVF9 776 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 ABHD13Q7L211 337 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 LAPTM4BQ86VI4 370 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 NUDCD3Q8IVD9 361 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 MMP21Q8N119 569 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 AMER2Q8N7J2 671 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 SRFBP1Q8NEF9 429 aaKnown RBP8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 HUS1BQ8NHY5 278 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 UTP15Q8TED0 518 aaKnown RBP8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 AGAP11Q8TF27 550 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 PSMF1Q92530 271 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 GAL3ST3Q96A11 431 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 MS4A6EQ96DS6 147 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 CMTM7Q96FZ5 175 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 FRG2BQ96QU4 278 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 MACROD1Q9BQ69 325 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 MS4A8Q9BY19 250 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 REXO4Q9GZR2 422 aaKnown RBP8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 MCCC2Q9HCC0 563 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 ANKHQ9HCJ1 492 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 DMRT3Q9NQL9 472 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 SNX6Q9UNH7 406 aa8.17□□□□□ -1.1
CLSTN3-212ENST00000541770 IGLV3-12A0A075B6K2 115 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 A0A088AWK7 358 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 A0A0A6YYC8 382 aaPredicted RBP8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 SERTM1A2A2V5 107 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 OR5H15A6NDH6 313 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 A8MUI8 341 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 I3L1I5 382 aaPredicted RBP8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 UBFD1O14562 309 aaKnown RBP8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 ZNHIT1O43257 154 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 GALR3O60755 368 aaPredicted RBP8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 PRAMEF2O60811 474 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 OR4F21O95013 312 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 SNUPNO95149 360 aaKnown RBP8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 BMP10O95393 424 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 KRT6AP02538 564 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 STATHP02808 62 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 KRT6BP04259 564 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 SERPINA7P05543 415 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 HEXBP07686 556 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 ITGAMP11215 1152 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 CD99P14209 185 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 ABOP16442 354 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 IL1RNP18510 177 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 AGAP20933 346 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 ZNF10P21506 573 aaPredicted RBP8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 PTX3P26022 381 aaPredicted RBP8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 HNRNPH1P31943 449 aaKnown RBP8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 AVPR1BP47901 424 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 KRT6CP48668 564 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 ST13P50502 369 aaKnown RBP8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 WDR4P57081 412 aaKnown RBP8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 SNRPNP63162 240 aaKnown RBP8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 ALDH6A1Q02252 535 aaKnown RBP8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 TGM3Q08188 693 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 IFT88Q13099 833 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 CUL3Q13618 768 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 DSG2Q14126 1118 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 RCN2Q14257 317 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 ZNF766Q5HY98 468 aa8.16□□□□□ -1.1
CLSTN3-212ENST00000541770 TOR1AIP1Q5JTV8 583 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms