RNA–Protein interactions for RNA: ENST00000538708.5

PTPRB-204, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-204ENST00000538708 HSPA12AO43301 675 aa9.08□□□□□ -0.96
PTPRB-204ENST00000538708 SCGNO76038 276 aa9.08□□□□□ -0.96
PTPRB-204ENST00000538708 B3GNT6Q6ZMB0 384 aa9.08□□□□□ -0.96
PTPRB-204ENST00000538708 AQP11Q8NBQ7 271 aa9.08□□□□□ -0.96
PTPRB-204ENST00000538708 SFXN2Q96NB2 322 aa9.08□□□□□ -0.96
PTPRB-204ENST00000538708 CGREF1Q99674 301 aa9.08□□□□□ -0.96
PTPRB-204ENST00000538708 SOX17Q9H6I2 414 aaPredicted RBP9.08□□□□□ -0.96
PTPRB-204ENST00000538708 CDH20Q9HBT6 801 aa9.08□□□□□ -0.96
PTPRB-204ENST00000538708 VNN3Q9NY84 501 aa9.08□□□□□ -0.96
PTPRB-204ENST00000538708 TAAR2Q9P1P5 351 aa9.08□□□□□ -0.96
PTPRB-204ENST00000538708 FBXO9Q9UK97 447 aaPredicted RBP9.08□□□□□ -0.96
PTPRB-204ENST00000538708 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 C17orf105B2RV13 164 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 H3BML4 177 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 VILLO15195 856 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 DFNA5O60443 496 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 CSN2P05814 226 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 H2BFMP0C1H6 154 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 GSTT2BP0CG30 244 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 CD1DP15813 335 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 AK4P27144 223 aaPredicted RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 ADAM8P78325 824 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 PITPNAQ00169 270 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 STK11Q15831 433 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 FAM26DQ5JW98 314 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 TMEM214Q6NUQ4 689 aaKnown RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 SLCO6A1Q86UG4 719 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 KLHDC8AQ8IYD2 350 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 SDR16C5Q8N3Y7 309 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 OR6N2Q8NGY6 317 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 TRMT10AQ8TBZ6 339 aaKnown RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 DNAJA4Q8WW22 397 aaPredicted RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 S100ZQ8WXG8 99 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 DIRAS2Q96HU8 199 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 RHCGQ9UBD6 479 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 C15orf41Q9Y2V0 281 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 TRBV11-1A0A0K0K1C0 115 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 CHRM5P08912 532 aaPredicted RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 POU3F2P20265 443 aaPredicted RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 CFL1P23528 166 aaKnown RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 TIA1P31483 386 aaKnown RBP eCLIP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 EEFSECP57772 596 aaKnown RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 SIM1P81133 766 aaPredicted RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 NFATC4Q14934 902 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 TIGD6Q17RP2 521 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 TMEM240Q5SV17 173 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 HMBOX1Q6NT76 420 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 KIAA1211LQ6NV74 962 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 FIGNL1Q6PIW4 674 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 CBR4Q8N4T8 237 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 SPPL3Q8TCT6 385 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 HSH2DQ96JZ2 352 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 CHCHD6Q9BRQ6 235 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 TMEM121BQ9BXQ6 578 aaPredicted RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 R3HDMLQ9H3Y0 253 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 TIMMDC1Q9NPL8 285 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 ING4Q9UNL4 249 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 NPIPB15A6NHN6 443 aaPredicted RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 OR52A4PA6NMU1 304 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 ATF6P18850 670 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 MECP2P51608 486 aaKnown RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 GPR143P51810 404 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 NR1H2P55055 460 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 EMX2Q04743 252 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 SWI5Q1ZZU3 235 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 MANEALQ5VSG8 457 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 KLHDC10Q6PID8 442 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 MDGA1Q8NFP4 955 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 NSMAFQ92636 917 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 SCRN2Q96FV2 425 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 ATXN7L1Q9ULK2 861 aaPredicted RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 SATB2Q9UPW6 733 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 NSG1A0A0A6YYJ2 146 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 A0A1W2PRQ8 180 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 GGT3PA6NGU5 568 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 M0QX08 132 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 ZNF821O75541 412 aaPredicted RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 ITGBL1O95965 494 aaPredicted RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 ALDOAP04075 364 aaKnown RBP9.07□□□□□ -0.96
PTPRB-204ENST00000538708 DRD2P14416 443 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 HOXC13P31276 330 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 FMO3P31513 532 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 FNTBP49356 437 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 RRADP55042 308 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 MLLT10P55197 1068 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 TRAM2Q15035 370 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 REEP3Q6NUK4 255 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 ULK3Q6PHR2 472 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 PAMR1Q6UXH9 720 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 HSD11B1LQ7Z5J1 315 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 TMEM17Q86X19 198 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 ALOXE3Q9BYJ1 711 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 ADAM18Q9Y3Q7 739 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 PRSS51A0A1B0GVH4 220 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 UNC119BA6NIH7 251 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 RAB36O95755 333 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 SLC3A1Q07837 685 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 TMEM31Q5JXX7 168 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 HMGN2P46Q86SG4 172 aa9.07□□□□□ -0.96
PTPRB-204ENST00000538708 GALNT10Q86SR1 603 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms