RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 FAM47BQ8NA70 645 aa7.82□□□□□ -1.16
NEDD8-207ENST00000533242 ST6GALNAC3Q8NDV1 305 aa7.82□□□□□ -1.16
NEDD8-207ENST00000533242 METTL6Q8TCB7 284 aa7.82□□□□□ -1.16
NEDD8-207ENST00000533242 TFAP2CQ92754 450 aa7.82□□□□□ -1.16
NEDD8-207ENST00000533242 MARVELD3Q96A59 401 aa7.82□□□□□ -1.16
NEDD8-207ENST00000533242 CLIP3Q96DZ5 547 aa7.82□□□□□ -1.16
NEDD8-207ENST00000533242 MRPS26Q9BYN8 205 aaKnown RBP7.82□□□□□ -1.16
NEDD8-207ENST00000533242 IKZF5Q9H5V7 419 aa7.82□□□□□ -1.16
NEDD8-207ENST00000533242 HRASLS2Q9NWW9 162 aa7.82□□□□□ -1.16
NEDD8-207ENST00000533242 PKP3Q9Y446 797 aa7.82□□□□□ -1.16
NEDD8-207ENST00000533242 POLR3HQ9Y535 204 aaPredicted RBP7.82□□□□□ -1.16
NEDD8-207ENST00000533242 TEP1Q99973 2627 aaKnown RBP7.82□□□□□ -1.16
NEDD8-207ENST00000533242 SMIM31A0A1B0GVY4 71 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 AQP12BA6NM10 295 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 H3BNH8 94 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 B3GALT4O96024 378 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 ALPPP05187 535 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 HSPA13P48723 471 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 MRPL19P49406 292 aaKnown RBP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 HMGCS1Q01581 520 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 PLOD1Q02809 727 aaPredicted RBP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 GTF2H2Q13888 395 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 KIAA0040Q15053 153 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 NCF4Q15080 339 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 PCBP2Q15366 365 aaKnown RBP eCLIP7.81□□□□□ -1.169e-10■□□□□ 8.1
NEDD8-207ENST00000533242 PDCD4Q53EL6 469 aaKnown RBP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 PTRHD1Q6GMV3 140 aaKnown RBP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 GTF2H2CQ6P1K8 395 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 AQP12AQ8IXF9 295 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 FAM86B1Q8N7N1 296 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 DGCR14Q96DF8 476 aaKnown RBP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 FBXL20Q96IG2 436 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 DPH2Q9BQC3 489 aaPredicted RBP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 OSBPL11Q9BXB4 747 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 TRIM54Q9BYV2 358 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 ANKRD60Q9BZ19 345 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 ZCCHC2Q9C0B9 1178 aaKnown RBP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 ASB8Q9H765 288 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 IPPKQ9H8X2 491 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 GID8Q9NWU2 228 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 SOHLH2Q9NX45 425 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 PTBP2Q9UKA9 531 aaKnown RBP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 PADI2Q9Y2J8 665 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 PCDHGA10Q9Y5H3 936 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 MAGED1Q9Y5V3 778 aaPredicted RBP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 CCDC88CQ9P219 2028 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 C9J4A7 227 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 H0YJX3 145 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 EI24O14681 340 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 POP7O75817 140 aaKnown RBP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 H6PDO95479 791 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 C1QCP02747 245 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 BNIP2Q12982 314 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 MYBPC3Q14896 1274 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 AP5B1Q2VPB7 878 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 ATP6AP1LQ52LC2 224 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 COQ5Q5HYK3 327 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 PRMT9Q6P2P2 845 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 CYP20A1Q6UW02 462 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 FAM83HQ6ZRV2 1179 aaPredicted RBP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 FRA10AC1Q70Z53 315 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 SYTL1Q8IYJ3 562 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 C10orf111Q8N326 155 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 ZADH2Q8N4Q0 377 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 DTWD1Q8N5C7 304 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 PDPRQ8NCN5 879 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 TSPAN14Q8NG11 270 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 TM9SF4Q92544 642 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 PDLIM5Q96HC4 596 aaKnown RBP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 FER1L6-AS2Q96M78 137 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 SEPHS2Q99611 448 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 KCTD14Q9BQ13 255 aaPredicted RBP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 RUBCNLQ9H714 662 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 LIN28AQ9H9Z2 209 aaKnown RBP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 SLC6A13Q9NSD5 602 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 NUDT4Q9NZJ9 180 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 VAPAQ9P0L0 249 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 LEF1Q9UJU2 399 aaPredicted RBP7.81□□□□□ -1.16
NEDD8-207ENST00000533242 UTS2RQ9UKP6 389 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 VPS9D1Q9Y2B5 631 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 CEPT1Q9Y6K0 416 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 COMMD3-BMI1R4GMX3 469 aa7.81□□□□□ -1.16
NEDD8-207ENST00000533242 NUP214P35658 2090 aaPredicted RBP7.8□□□□□ -1.16
NEDD8-207ENST00000533242 TRBV5-4A0A0C4DH59 114 aa7.8□□□□□ -1.16
NEDD8-207ENST00000533242 FAM234BA2RU67 622 aa7.8□□□□□ -1.16
NEDD8-207ENST00000533242 OR6C74A6NCV1 312 aa7.8□□□□□ -1.16
NEDD8-207ENST00000533242 CHEK2O96017 543 aa7.8□□□□□ -1.16
NEDD8-207ENST00000533242 HBQ1P09105 142 aa7.8□□□□□ -1.16
NEDD8-207ENST00000533242 MSL3P1P0C860 447 aa7.8□□□□□ -1.16
NEDD8-207ENST00000533242 EPORP19235 508 aa7.8□□□□□ -1.16
NEDD8-207ENST00000533242 PSMA4P25789 261 aaKnown RBP7.8□□□□□ -1.16
NEDD8-207ENST00000533242 ITGA3P26006 1051 aa7.8□□□□□ -1.16
NEDD8-207ENST00000533242 ACRV1P26436 265 aa7.8□□□□□ -1.16
NEDD8-207ENST00000533242 ABRQ12979 859 aa7.8□□□□□ -1.16
NEDD8-207ENST00000533242 RAPSNQ13702 412 aa7.8□□□□□ -1.16
NEDD8-207ENST00000533242 ATP6AP1Q15904 470 aa7.8□□□□□ -1.16
NEDD8-207ENST00000533242 NKG7Q16617 165 aa7.8□□□□□ -1.16
NEDD8-207ENST00000533242 GTDC1Q4AE62 458 aa7.8□□□□□ -1.16
NEDD8-207ENST00000533242 ATP13A5Q4VNC0 1218 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms